Variant report
| Variant | rs16847640 |
|---|---|
| Chromosome Location | chr2:142677924-142677925 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10165154 | 0.82[CHB][hapmap] |
| rs10183142 | 0.83[CHB][hapmap] |
| rs10198650 | 0.81[CHB][hapmap] |
| rs10496906 | 0.82[CHB][hapmap] |
| rs10496907 | 1.00[YRI][hapmap] |
| rs12467014 | 0.86[CHB][hapmap] |
| rs12471235 | 0.84[CHB][hapmap] |
| rs12611558 | 0.81[CHB][hapmap] |
| rs12621414 | 0.81[CHB][hapmap] |
| rs12623563 | 0.82[CHB][hapmap] |
| rs13012265 | 0.82[CHB][hapmap] |
| rs13031056 | 0.83[CHB][hapmap] |
| rs13408365 | 0.82[CHB][hapmap] |
| rs13418027 | 0.82[CHB][hapmap] |
| rs13429414 | 0.82[CHB][hapmap] |
| rs1369528 | 0.82[CHB][hapmap] |
| rs1369542 | 0.82[CHB][hapmap] |
| rs1435616 | 0.83[CHB][hapmap] |
| rs1529869 | 0.82[CHB][hapmap] |
| rs1561019 | 0.82[CHB][hapmap] |
| rs1898018 | 0.82[CHB][hapmap] |
| rs1991997 | 0.82[CHB][hapmap] |
| rs1991998 | 0.82[CHB][hapmap] |
| rs2196353 | 0.83[CHB][hapmap] |
| rs4662555 | 0.82[CHB][hapmap] |
| rs4662557 | 0.83[CHB][hapmap] |
| rs6429927 | 0.82[CHB][hapmap] |
| rs7569225 | 0.85[JPT][hapmap] |
| rs7593594 | 0.82[CHB][hapmap] |
| rs7602677 | 0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes] |
| rs9287326 | 0.83[CHB][hapmap] |
| rs9789430 | 0.84[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv583238 | chr2:142646363-142739121 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv875251 | chr2:142656200-142701852 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv875252 | chr2:142666003-142768518 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
