Variant report

Variant	rs1369542
Chromosome Location	chr2:142679212-142679213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10165154	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10181838	0.95[CHB][hapmap]
rs10182288	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10183142	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];0.80[TSI][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10190657	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10198650	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10496906	1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap]
rs11693445	0.84[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11884984	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs12467014	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs12471235	0.91[CHB][hapmap]
rs12611558	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs12621414	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs12623563	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs13012265	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs13024435	0.85[ASN][1000 genomes]
rs13031056	1.00[CHB][hapmap]
rs13408365	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13418027	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs13429414	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs1369528	1.00[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs1369530	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1435598	0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap]
rs1435616	1.00[CHB][hapmap]
rs1529869	0.87[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.91[YRI][hapmap]
rs1561019	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs16847640	0.82[CHB][hapmap]
rs1898018	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs1991997	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs1991998	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs2196353	1.00[CHB][hapmap]
rs2381169	0.81[ASN][1000 genomes]
rs4662555	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs4662557	0.91[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap]
rs6429927	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7579772	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7593594	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs7602677	0.90[CHB][hapmap]
rs9287326	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9789430	0.91[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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