Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10165154	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10181838	0.86[CHB][hapmap]
rs10182288	0.82[CHB][hapmap]
rs10183142	0.82[CHB][hapmap]
rs10198650	0.90[CHB][hapmap]
rs10496906	0.90[CHB][hapmap]
rs11884984	0.85[CHB][hapmap]
rs12467014	0.85[CHB][hapmap]
rs12471235	0.83[CHB][hapmap]
rs12611558	0.90[CHB][hapmap]
rs12621414	0.90[CHB][hapmap]
rs12623563	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs12995397	0.82[ASN][1000 genomes]
rs13012265	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs13031056	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs13408365	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs13418027	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs13429414	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1369528	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1369542	0.90[CHB][hapmap]
rs1435598	0.83[JPT][hapmap]
rs1435612	0.80[JPT][hapmap]
rs1435616	0.91[CHB][hapmap]
rs1529869	0.90[CHB][hapmap]
rs1561019	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs16847640	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1898018	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1991997	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1991998	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs2196353	0.91[CHB][hapmap]
rs2381169	0.80[ASN][1000 genomes]
rs4662555	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs4662557	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6429927	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7569225	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs7593594	0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs9287326	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9789430	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142647000-142647800	Enhancers	Brain Germinal Matrix	brain
2	chr2:142647400-142647800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:142647400-142647800	Active TSS	Brain Substantia Nigra	brain
4	chr2:142647400-142648200	Weak transcription	Brain Anterior Caudate	brain

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