Variant report

Variant	rs11693445
Chromosome Location	chr2:142639313-142639314
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10165154	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10181838	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10182288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10183142	0.89[CEU][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10190657	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10194554	0.87[ASN][1000 genomes]
rs10198650	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10496906	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs11884984	0.81[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11895935	0.82[ASN][1000 genomes]
rs12467014	0.87[JPT][hapmap]
rs12471235	0.87[JPT][hapmap]
rs12611498	0.87[ASN][1000 genomes]
rs12611558	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs12618005	0.87[ASN][1000 genomes]
rs12618032	0.87[ASN][1000 genomes]
rs12621414	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12623563	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs12995397	0.84[ASN][1000 genomes]
rs13012265	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs13013316	0.86[JPT][hapmap]
rs13024435	0.81[ASN][1000 genomes]
rs13031056	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs13408365	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13418027	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs13429414	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1369528	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1369530	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1369542	0.84[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1435598	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs1435612	0.90[JPT][hapmap]
rs1435616	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs1529869	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs1561019	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1898018	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1991997	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1991998	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2196353	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs2381169	0.85[ASN][1000 genomes]
rs4662555	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4662557	1.00[JPT][hapmap]
rs6429927	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7569225	0.88[CHB][hapmap]
rs7579772	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7593594	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9287326	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9789430	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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