Variant report
| Variant | rs12691627 |
|---|---|
| Chromosome Location | chr2:142696367-142696368 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142691573..142694567-chr2:142695024..142697127,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10194554 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11884984 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11895935 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12611498 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12611558 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12618005 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12618032 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12621414 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12623563 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12995397 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs13024435 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs13031056 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13429414 | 0.93[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1369528 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1435612 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1991997 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1991998 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2381169 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs34879655 | 0.83[AMR][1000 genomes] |
| rs4662555 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7593594 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9287326 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv583238 | chr2:142646363-142739121 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv875251 | chr2:142656200-142701852 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv875252 | chr2:142666003-142768518 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv1004207 | chr2:142684812-142741653 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv2762863 | chr2:142684812-142771707 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:142696200-142698000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
