Variant report

Variant	rs10191137
Chromosome Location	chr2:20272559-20272560
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20263567..20266524-chr2:20270563..20273787,4	K562	blood:
2	chr2:20098547..20100110-chr2:20271638..20273548,2	MCF-7	breast:
3	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
4	chr2:20225238..20227093-chr2:20270097..20272850,2	MCF-7	breast:
5	chr2:20245350..20248152-chr2:20271740..20273553,2	MCF-7	breast:
6	chr2:20211201..20213759-chr2:20270532..20272614,4	MCF-7	breast:
7	chr2:20155184..20157603-chr2:20271244..20273099,3	MCF-7	breast:
8	chr2:20249788..20257046-chr2:20268868..20274735,23	MCF-7	breast:
9	chr2:20262539..20265067-chr2:20270708..20273020,3	K562	blood:
10	chr2:20271820..20275999-chr2:20291191..20294413,6	MCF-7	breast:
11	chr2:20272065..20273693-chr2:20288662..20290596,2	MCF-7	breast:
12	chr2:20210963..20214277-chr2:20270799..20274323,4	MCF-7	breast:
13	chr2:20270622..20273512-chr2:20307983..20310075,2	MCF-7	breast:
14	chr2:20225520..20228752-chr2:20271563..20273448,3	MCF-7	breast:
15	chr2:20270221..20272820-chr2:20277699..20279389,2	K562	blood:
16	chr2:20271585..20273476-chr2:20412468..20414471,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000132031	Chromatin interaction
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

rs_ID	r²[population]
rs10201104	0.83[AMR][1000 genomes]
rs10210388	0.83[AMR][1000 genomes]
rs13412576	0.83[AMR][1000 genomes]
rs13421480	0.83[AMR][1000 genomes]
rs988317	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20266600-20273000	Weak transcription	Psoas Muscle	Psoas
2	chr2:20267200-20275000	Enhancers	Placenta	Placenta
3	chr2:20269800-20272600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:20270000-20273200	Enhancers	HMEC	breast
5	chr2:20270000-20273600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr2:20270000-20275200	Enhancers	Fetal Muscle Leg	muscle
7	chr2:20270600-20274000	Enhancers	Fetal Heart	heart
8	chr2:20270800-20274000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr2:20271000-20273000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:20271000-20273000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:20271000-20275000	Enhancers	Pancreas	Pancrea
12	chr2:20271200-20272600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:20271200-20272600	Enhancers	Fetal Intestine Large	intestine
14	chr2:20271200-20272600	Enhancers	HSMMtube	muscle
15	chr2:20271200-20275000	Enhancers	Left Ventricle	heart
16	chr2:20271400-20272600	Enhancers	Fetal Kidney	kidney
17	chr2:20271400-20274000	Weak transcription	Lung	lung
18	chr2:20271600-20273400	Weak transcription	Gastric	stomach
19	chr2:20271600-20273800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:20271600-20273800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr2:20271800-20272800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr2:20271800-20273800	Weak transcription	Brain Angular Gyrus	brain
23	chr2:20272000-20272600	Weak transcription	Right Atrium	heart
24	chr2:20272000-20273000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:20272000-20273000	Weak transcription	Esophagus	oesophagus
26	chr2:20272000-20273200	Enhancers	Colon Smooth Muscle	Colon
27	chr2:20272000-20273400	Weak transcription	Fetal Intestine Small	intestine
28	chr2:20272000-20273600	Weak transcription	K562	blood
29	chr2:20272000-20273800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:20272000-20273800	Weak transcription	Spleen	Spleen
31	chr2:20272000-20274400	Enhancers	NHEK	skin
32	chr2:20272000-20280600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr2:20272200-20272600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr2:20272200-20272600	Weak transcription	Right Ventricle	heart
35	chr2:20272200-20272600	Enhancers	Osteobl	bone
36	chr2:20272200-20272800	Enhancers	Fetal Stomach	stomach
37	chr2:20272200-20272800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr2:20272200-20273200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:20272200-20273200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr2:20272200-20273200	Enhancers	Stomach Smooth Muscle	stomach
41	chr2:20272200-20273600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr2:20272200-20273800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:20272200-20274000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr2:20272200-20274000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr2:20272200-20274000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr2:20272200-20274000	Weak transcription	Liver	Liver
47	chr2:20272200-20274000	Weak transcription	Colonic Mucosa	Colon
48	chr2:20272200-20274000	Enhancers	NHLF	lung
49	chr2:20272200-20274200	Enhancers	Fetal Muscle Trunk	muscle
50	chr2:20272200-20274400	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links