Variant report

Variant	rs13421480
Chromosome Location	chr2:20288533-20288534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20286111..20289844-chr2:20290692..20292976,3	MCF-7	breast:
2	chr2:20285871..20288708-chr2:20290874..20293778,2	MCF-7	breast:
3	chr2:20249442..20252213-chr2:20288263..20291117,3	K562	blood:
4	chr2:20250052..20253653-chr2:20284923..20290028,5	MCF-7	breast:
5	chr2:20287087..20289341-chr2:20424878..20426458,2	K562	blood:
6	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:
7	chr2:20284419..20286045-chr2:20286888..20289126,2	MCF-7	breast:
8	chr2:20287240..20289975-chr2:20292126..20294060,2	K562	blood:
9	chr2:20249442..20251362-chr2:20288263..20290257,2	K562	blood:
10	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
11	chr2:20278085..20279898-chr2:20286384..20289242,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000115884	Chromatin interaction
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

rs_ID	r²[population]
rs10180898	1.00[YRI][hapmap]
rs10191137	0.83[AMR][1000 genomes]
rs10201104	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10210388	0.80[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13386531	1.00[YRI][hapmap]
rs13396075	1.00[YRI][hapmap]
rs13412192	1.00[YRI][hapmap]
rs13412576	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415422	1.00[YRI][hapmap]
rs13433062	0.80[YRI][hapmap]
rs9306888	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs988317	0.83[AMR][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20280800-20291000	Weak transcription	A549	lung
2	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:20282000-20288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:20282200-20289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:20282200-20289200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:20282200-20289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:20282400-20290000	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:20282400-20290400	Weak transcription	Placenta	Placenta
9	chr2:20282800-20290600	Weak transcription	Hela-S3	cervix
10	chr2:20286200-20288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:20286200-20290400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:20286600-20290400	Weak transcription	HSMMtube	muscle
13	chr2:20286800-20290400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:20288000-20288800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:20288000-20288800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
16	chr2:20288000-20290200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:20288200-20288600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:20288200-20288600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr2:20288200-20288800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:20288200-20288800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:20288200-20288800	Enhancers	Brain Anterior Caudate	brain
22	chr2:20288200-20289200	Enhancers	HepG2	liver
23	chr2:20288400-20288800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr2:20288400-20288800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr2:20288400-20289200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:20288400-20289400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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