Variant report

Variant	rs13412192
Chromosome Location	chr2:20297885-20297886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20214958..20215898-chr2:20297637..20298521,4	K562	blood:
2	chr2:20072609..20074273-chr2:20296535..20298173,2	K562	blood:
3	chr2:20100345..20103243-chr2:20296732..20299128,2	MCF-7	breast:
4	chr2:20154421..20157278-chr2:20295987..20298973,3	MCF-7	breast:
5	chr2:20251166..20253284-chr2:20295543..20298394,2	K562	blood:
6	chr2:20157779..20158423-chr2:20297722..20298509,2	MCF-7	breast:
7	chr2:20154448..20157008-chr2:20296736..20298879,2	MCF-7	breast:
8	chr2:20296833..20299152-chr2:20423659..20425384,3	MCF-7	breast:
9	chr2:20210274..20217508-chr2:20292118..20299922,13	MCF-7	breast:
10	chr2:20250411..20253613-chr2:20297643..20299802,4	MCF-7	breast:
11	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
12	chr2:20155317..20156277-chr2:20297540..20298567,10	MCF-7	breast:
13	chr2:20154616..20156310-chr2:20297424..20298664,25	K562	blood:
14	chr2:20210810..20211522-chr2:20297641..20298165,2	MCF-7	breast:
15	chr2:20157736..20158369-chr2:20297628..20298583,2	K562	blood:
16	chr2:20280896..20282415-chr2:20296609..20299521,2	K562	blood:
17	chr2:20215025..20216011-chr2:20297649..20298217,2	MCF-7	breast:
18	chr2:20292117..20294039-chr2:20297489..20300259,2	MCF-7	breast:
19	chr2:20213367..20215755-chr2:20296083..20298973,4	MCF-7	breast:
20	chr2:20297655..20298611-chr2:20490488..20491367,2	MCF-7	breast:
21	chr2:20155231..20156341-chr2:20297460..20298639,28	MCF-7	breast:
22	chr2:20295420..20298254-chr2:20423828..20425433,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000183891	Chromatin interaction
ENSG00000115884	Chromatin interaction
ENSG00000132031	Chromatin interaction
ENSG00000223734	Chromatin interaction
ENSG00000271991	Chromatin interaction

rs_ID	r²[population]
rs10174955	1.00[AMR][1000 genomes]
rs10180898	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191451	1.00[AMR][1000 genomes]
rs10201104	1.00[YRI][hapmap]
rs10203575	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10210388	0.80[YRI][hapmap]
rs13386531	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396075	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402951	1.00[AMR][1000 genomes]
rs13412576	1.00[YRI][hapmap]
rs13415422	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13417047	1.00[AMR][1000 genomes]
rs13421480	1.00[YRI][hapmap]
rs13422363	1.00[AMR][1000 genomes]
rs13433062	0.80[YRI][hapmap];0.84[AFR][1000 genomes]
rs3937746	1.00[AMR][1000 genomes]
rs4602183	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9306888	1.00[YRI][hapmap]
rs987620	1.00[AMR][1000 genomes]

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20291000-20300000	Weak transcription	Right Atrium	heart
2	chr2:20292000-20300400	Weak transcription	HUVEC	blood vessel
3	chr2:20293600-20304200	Weak transcription	Stomach Mucosa	stomach
4	chr2:20294000-20304400	Weak transcription	Pancreas	Pancrea
5	chr2:20294400-20300200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:20297400-20298000	Enhancers	HSMMtube	muscle
7	chr2:20297400-20298400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:20297600-20298000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:20297600-20298000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:20297600-20298000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:20297600-20298000	Enhancers	Ovary	ovary
12	chr2:20297600-20298000	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr2:20297600-20298000	Enhancers	HSMM	muscle
14	chr2:20297600-20298200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:20297600-20298200	Enhancers	Brain Angular Gyrus	brain
16	chr2:20297600-20298200	Enhancers	Fetal Muscle Trunk	muscle
17	chr2:20297600-20298400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:20297600-20298400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:20297600-20298400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:20297600-20298400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr2:20297600-20298400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:20297600-20298400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:20297600-20298400	Enhancers	Fetal Muscle Leg	muscle
24	chr2:20297600-20298400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr2:20297600-20298400	Enhancers	HMEC	breast
26	chr2:20297600-20298400	Enhancers	NHDF-Ad	bronchial
27	chr2:20297800-20298000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:20297800-20298000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr2:20297800-20298000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:20297800-20298000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:20297800-20298000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr2:20297800-20298000	Flanking Active TSS	Brain Anterior Caudate	brain
33	chr2:20297800-20298000	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr2:20297800-20298000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr2:20297800-20298000	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
36	chr2:20297800-20298000	Enhancers	Placenta	Placenta
37	chr2:20297800-20298000	Flanking Active TSS	A549	lung
38	chr2:20297800-20298000	Flanking Active TSS	NHLF	lung
39	chr2:20297800-20298200	Enhancers	Primary B cells from peripheral blood	blood
40	chr2:20297800-20298200	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr2:20297800-20298200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr2:20297800-20298200	Enhancers	Colonic Mucosa	Colon
43	chr2:20297800-20298200	Flanking Active TSS	Hela-S3	cervix
44	chr2:20297800-20298400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr2:20297800-20298400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr2:20297800-20298400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
47	chr2:20297800-20298400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr2:20297800-20298400	Enhancers	Liver	Liver
49	chr2:20297800-20298400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr2:20297800-20298400	Enhancers	Dnd41	blood

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