Variant report

Variant	rs10203575
Chromosome Location	chr2:20281624-20281625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20280896..20282415-chr2:20296609..20299521,2	K562	blood:
2	chr2:20277155..20282170-chr2:20290246..20293600,5	MCF-7	breast:
3	chr2:20254933..20256660-chr2:20280504..20283208,2	MCF-7	breast:
4	chr2:20248757..20252967-chr2:20277280..20285105,10	MCF-7	breast:
5	chr2:20249878..20252203-chr2:20279572..20281850,2	K562	blood:
6	chr2:20249786..20253556-chr2:20278179..20282611,6	MCF-7	breast:
7	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10174955	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10180898	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191451	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13386531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396075	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402951	1.00[AMR][1000 genomes]
rs13412192	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415422	1.00[AMR][1000 genomes]
rs13417047	1.00[AMR][1000 genomes]
rs13422363	1.00[AMR][1000 genomes]
rs3937746	1.00[AMR][1000 genomes]
rs4602183	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs987620	1.00[AMR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20273200-20281800	Weak transcription	Hela-S3	cervix
2	chr2:20274200-20281800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:20277400-20282400	Enhancers	Placenta	Placenta
4	chr2:20279600-20282000	Enhancers	Fetal Muscle Trunk	muscle
5	chr2:20279600-20282200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:20280200-20282000	Enhancers	Ovary	ovary
7	chr2:20280200-20282000	Enhancers	Pancreas	Pancrea
8	chr2:20280200-20282200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:20280200-20282400	Enhancers	Fetal Muscle Leg	muscle
10	chr2:20280400-20282000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:20280400-20282000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:20280400-20282000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:20280600-20282000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr2:20280600-20282200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:20280600-20282200	Enhancers	HSMMtube	muscle
16	chr2:20280800-20282000	Enhancers	Brain Germinal Matrix	brain
17	chr2:20280800-20291000	Weak transcription	A549	lung
18	chr2:20281000-20282000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr2:20281200-20281800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:20281200-20281800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:20281200-20282000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr2:20281200-20282000	Weak transcription	Fetal Lung	lung
23	chr2:20281200-20282200	Bivalent Enhancer	HepG2	liver
24	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:20281400-20281800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:20281600-20282200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:20281600-20282400	Enhancers	NHEK	skin
28	chr2:20281600-20282600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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