Variant report

Variant	rs13396075
Chromosome Location	chr2:20296106-20296107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20154421..20157278-chr2:20295987..20298973,3	MCF-7	breast:
2	chr2:20251166..20253284-chr2:20295543..20298394,2	K562	blood:
3	chr2:20210274..20217508-chr2:20292118..20299922,13	MCF-7	breast:
4	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
5	chr2:20248110..20258329-chr2:20290320..20297278,22	MCF-7	breast:
6	chr2:20289699..20292359-chr2:20294103..20297412,3	MCF-7	breast:
7	chr2:20187273..20189318-chr2:20295101..20297253,2	MCF-7	breast:
8	chr2:20213367..20215755-chr2:20296083..20298973,4	MCF-7	breast:
9	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
10	chr2:20295420..20298254-chr2:20423828..20425433,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000223734	Chromatin interaction
ENSG00000132031	Chromatin interaction
ENSG00000115884	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10174955	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10180898	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191451	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10201104	1.00[YRI][hapmap]
rs10203575	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10210388	0.80[YRI][hapmap]
rs13386531	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402951	1.00[AMR][1000 genomes]
rs13412192	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13412576	1.00[YRI][hapmap]
rs13415422	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13417047	1.00[AMR][1000 genomes]
rs13421480	1.00[YRI][hapmap]
rs13422363	1.00[AMR][1000 genomes]
rs13433062	0.80[YRI][hapmap];0.84[AFR][1000 genomes]
rs3937746	1.00[AMR][1000 genomes]
rs4602183	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9306888	1.00[YRI][hapmap]
rs987620	1.00[AMR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20291000-20300000	Weak transcription	Right Atrium	heart
2	chr2:20291600-20297800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:20292000-20300400	Weak transcription	HUVEC	blood vessel
4	chr2:20293600-20304200	Weak transcription	Stomach Mucosa	stomach
5	chr2:20294000-20297600	Weak transcription	Ovary	ovary
6	chr2:20294000-20297800	Weak transcription	Placenta	Placenta
7	chr2:20294000-20304400	Weak transcription	Pancreas	Pancrea
8	chr2:20294200-20297600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:20294200-20297600	Weak transcription	Esophagus	oesophagus
10	chr2:20294200-20297600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:20294200-20297600	Weak transcription	Hela-S3	cervix
12	chr2:20294200-20297600	Weak transcription	HSMM	muscle
13	chr2:20294200-20297600	Weak transcription	NHDF-Ad	bronchial
14	chr2:20294200-20297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:20294400-20296200	Enhancers	HepG2	liver
16	chr2:20294400-20297400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:20294400-20297400	Weak transcription	HSMMtube	muscle
18	chr2:20294400-20297600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:20294400-20297600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:20294400-20297600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:20294400-20297600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:20294400-20297800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:20294400-20297800	Weak transcription	NH-A	brain
24	chr2:20294400-20300200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr2:20294600-20297600	Weak transcription	Fetal Muscle Leg	muscle
26	chr2:20294800-20297600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:20295200-20297600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr2:20295200-20297600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr2:20295200-20297600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:20295200-20297600	Weak transcription	NHLF	lung
31	chr2:20295200-20297800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr2:20295200-20297800	Weak transcription	NHEK	skin
33	chr2:20295400-20297600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:20295400-20297600	Weak transcription	HMEC	breast
35	chr2:20295600-20297800	Weak transcription	Liver	Liver
36	chr2:20295800-20297600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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