Variant report

Variant	rs13386531
Chromosome Location	chr2:20290477-20290478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20268478..20271036-chr2:20289525..20291447,2	MCF-7	breast:
2	chr2:20248110..20258329-chr2:20290320..20297278,22	MCF-7	breast:
3	chr2:20289699..20292359-chr2:20294103..20297412,3	MCF-7	breast:
4	chr2:20249442..20252213-chr2:20288263..20291117,3	K562	blood:
5	chr2:20272065..20273693-chr2:20288662..20290596,2	MCF-7	breast:
6	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:
7	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
8	chr2:20277155..20282170-chr2:20290246..20293600,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10174955	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10180898	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191451	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10201104	1.00[YRI][hapmap]
rs10203575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396075	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402951	1.00[AMR][1000 genomes]
rs13412192	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13412576	1.00[YRI][hapmap]
rs13415422	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13417047	1.00[AMR][1000 genomes]
rs13421480	1.00[YRI][hapmap]
rs13422363	1.00[AMR][1000 genomes]
rs13433062	0.81[AFR][1000 genomes]
rs3937746	1.00[AMR][1000 genomes]
rs4602183	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9306888	1.00[YRI][hapmap]
rs987620	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20280800-20291000	Weak transcription	A549	lung
2	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:20282800-20290600	Weak transcription	Hela-S3	cervix
4	chr2:20288800-20290800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:20288800-20291400	Weak transcription	Brain Anterior Caudate	brain
6	chr2:20288800-20293200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:20288800-20293200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:20289200-20290600	Weak transcription	HepG2	liver
9	chr2:20289200-20293200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:20289600-20290800	Enhancers	K562	blood
11	chr2:20289600-20291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:20289800-20290800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:20289800-20293400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:20290000-20290800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:20290000-20290800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:20290000-20291000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:20290000-20291400	Enhancers	Fetal Muscle Trunk	muscle
18	chr2:20290000-20291800	Enhancers	Fetal Muscle Leg	muscle
19	chr2:20290000-20291800	Enhancers	Ovary	ovary
20	chr2:20290000-20293000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:20290000-20294400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:20290200-20290600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:20290200-20291200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:20290200-20291400	Weak transcription	Psoas Muscle	Psoas
25	chr2:20290400-20290800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:20290400-20290800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr2:20290400-20290800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr2:20290400-20290800	Enhancers	HSMMtube	muscle
29	chr2:20290400-20290800	Enhancers	NHDF-Ad	bronchial
30	chr2:20290400-20290800	Enhancers	Osteobl	bone
31	chr2:20290400-20291000	Enhancers	NHLF	lung
32	chr2:20290400-20291200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:20290400-20291200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr2:20290400-20294000	Enhancers	Placenta	Placenta
35	chr2:20290400-20295400	Enhancers	HMEC	breast

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