Variant report

Variant	rs987620
Chromosome Location	chr2:20262722-20262723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20260254..20262852-chr2:20267314..20269443,2	K562	blood:
2	chr2:20262539..20265067-chr2:20270708..20273020,3	K562	blood:
3	chr2:20214721..20216712-chr2:20262631..20264995,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10174955	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10180898	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191451	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10203575	1.00[AMR][1000 genomes]
rs13386531	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396075	1.00[AMR][1000 genomes]
rs13402951	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13412192	1.00[AMR][1000 genomes]
rs13415422	1.00[AMR][1000 genomes]
rs13417047	1.00[AMR][1000 genomes]
rs13422363	1.00[AMR][1000 genomes]
rs3937746	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4602183	1.00[AMR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20252400-20266000	Weak transcription	Pancreas	Pancrea
2	chr2:20253200-20264400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:20260600-20262800	Enhancers	NHDF-Ad	bronchial
4	chr2:20260600-20264200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:20260600-20266600	Enhancers	Fetal Muscle Leg	muscle
6	chr2:20261000-20262800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:20261200-20262800	Enhancers	Colon Smooth Muscle	Colon
8	chr2:20261400-20262800	Enhancers	NHLF	lung
9	chr2:20261400-20263200	Enhancers	Fetal Stomach	stomach
10	chr2:20261400-20263400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:20261400-20265600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:20261600-20262800	Enhancers	Adipose Nuclei	Adipose
13	chr2:20261600-20263200	Enhancers	Stomach Smooth Muscle	stomach
14	chr2:20261600-20263400	Enhancers	HSMM	muscle
15	chr2:20261800-20262800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:20261800-20263400	Enhancers	Rectal Smooth Muscle	rectum
17	chr2:20261800-20266800	Enhancers	Placenta	Placenta
18	chr2:20262000-20262800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr2:20262000-20265600	Enhancers	HepG2	liver
20	chr2:20262200-20262800	Enhancers	Fetal Lung	lung
21	chr2:20262200-20262800	Enhancers	HSMMtube	muscle
22	chr2:20262200-20265600	Weak transcription	Colonic Mucosa	Colon
23	chr2:20262200-20265800	Weak transcription	Right Ventricle	heart
24	chr2:20262400-20263400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:20262400-20263400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:20262400-20263400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr2:20262400-20264000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr2:20262600-20262800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr2:20262600-20262800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:20262600-20262800	Enhancers	Fetal Kidney	kidney
31	chr2:20262600-20263400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:20262600-20263400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:20262600-20263400	Enhancers	Osteobl	bone
34	chr2:20262600-20263800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:20262600-20265600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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