Variant report

Variant	rs10191451
Chromosome Location	chr2:20272845-20272846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20263567..20266524-chr2:20270563..20273787,4	K562	blood:
2	chr2:20098547..20100110-chr2:20271638..20273548,2	MCF-7	breast:
3	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
4	chr2:20225238..20227093-chr2:20270097..20272850,2	MCF-7	breast:
5	chr2:20245350..20248152-chr2:20271740..20273553,2	MCF-7	breast:
6	chr2:20155184..20157603-chr2:20271244..20273099,3	MCF-7	breast:
7	chr2:20249788..20257046-chr2:20268868..20274735,23	MCF-7	breast:
8	chr2:20262539..20265067-chr2:20270708..20273020,3	K562	blood:
9	chr2:20271820..20275999-chr2:20291191..20294413,6	MCF-7	breast:
10	chr2:20272065..20273693-chr2:20288662..20290596,2	MCF-7	breast:
11	chr2:20210963..20214277-chr2:20270799..20274323,4	MCF-7	breast:
12	chr2:20270622..20273512-chr2:20307983..20310075,2	MCF-7	breast:
13	chr2:20225520..20228752-chr2:20271563..20273448,3	MCF-7	breast:
14	chr2:20271585..20273476-chr2:20412468..20414471,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000132031	Chromatin interaction

rs_ID	r²[population]
rs10174955	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10180898	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10203575	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13386531	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396075	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402951	1.00[AMR][1000 genomes]
rs13412192	1.00[AMR][1000 genomes]
rs13415422	1.00[AMR][1000 genomes]
rs13417047	1.00[AMR][1000 genomes]
rs13422363	1.00[AMR][1000 genomes]
rs13433062	1.00[MKK][hapmap]
rs2348476	1.00[MEX][hapmap]
rs3937746	1.00[AMR][1000 genomes]
rs4602183	1.00[AMR][1000 genomes]
rs987620	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20266600-20273000	Weak transcription	Psoas Muscle	Psoas
2	chr2:20267200-20275000	Enhancers	Placenta	Placenta
3	chr2:20270000-20273200	Enhancers	HMEC	breast
4	chr2:20270000-20273600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr2:20270000-20275200	Enhancers	Fetal Muscle Leg	muscle
6	chr2:20270600-20274000	Enhancers	Fetal Heart	heart
7	chr2:20270800-20274000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:20271000-20273000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:20271000-20273000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:20271000-20275000	Enhancers	Pancreas	Pancrea
11	chr2:20271200-20275000	Enhancers	Left Ventricle	heart
12	chr2:20271400-20274000	Weak transcription	Lung	lung
13	chr2:20271600-20273400	Weak transcription	Gastric	stomach
14	chr2:20271600-20273800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:20271600-20273800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:20271800-20273800	Weak transcription	Brain Angular Gyrus	brain
17	chr2:20272000-20273000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:20272000-20273000	Weak transcription	Esophagus	oesophagus
19	chr2:20272000-20273200	Enhancers	Colon Smooth Muscle	Colon
20	chr2:20272000-20273400	Weak transcription	Fetal Intestine Small	intestine
21	chr2:20272000-20273600	Weak transcription	K562	blood
22	chr2:20272000-20273800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:20272000-20273800	Weak transcription	Spleen	Spleen
24	chr2:20272000-20274400	Enhancers	NHEK	skin
25	chr2:20272000-20280600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:20272200-20273200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:20272200-20273200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:20272200-20273200	Enhancers	Stomach Smooth Muscle	stomach
29	chr2:20272200-20273600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:20272200-20273800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:20272200-20274000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr2:20272200-20274000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:20272200-20274000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr2:20272200-20274000	Weak transcription	Liver	Liver
35	chr2:20272200-20274000	Weak transcription	Colonic Mucosa	Colon
36	chr2:20272200-20274000	Enhancers	NHLF	lung
37	chr2:20272200-20274200	Enhancers	Fetal Muscle Trunk	muscle
38	chr2:20272200-20274400	Enhancers	Adipose Nuclei	Adipose
39	chr2:20272200-20274400	Enhancers	Fetal Lung	lung
40	chr2:20272200-20275000	Enhancers	Ovary	ovary
41	chr2:20272400-20273200	Enhancers	Hela-S3	cervix
42	chr2:20272400-20273400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr2:20272400-20273400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr2:20272400-20273400	Enhancers	A549	lung
45	chr2:20272400-20273400	Enhancers	NHDF-Ad	bronchial
46	chr2:20272400-20273600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr2:20272400-20273800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr2:20272400-20273800	Weak transcription	Stomach Mucosa	stomach
49	chr2:20272400-20273800	Enhancers	HepG2	liver
50	chr2:20272400-20274000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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