Variant report

Variant	rs13422363
Chromosome Location	chr2:20247917-20247918
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD1	chr2:20247605-20252898	IMR90	lung:	n/a	n/a
2	MXI1	chr2:20247504-20253370	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:20246745..20249019-chr2:20548849..20550388,2	MCF-7	breast:
2	chr2:20245350..20248152-chr2:20271740..20273553,2	MCF-7	breast:
3	chr2:20243160..20246109-chr2:20246463..20248277,2	K562	blood:

Variant related genes	Relation type
ENSG00000223734	TF binding region
ENSG00000055917	Chromatin interaction

rs_ID	r²[population]
rs10174955	1.00[AMR][1000 genomes]
rs10180898	1.00[AMR][1000 genomes]
rs10191451	1.00[AMR][1000 genomes]
rs10203575	1.00[AMR][1000 genomes]
rs13386531	1.00[AMR][1000 genomes]
rs13396075	1.00[AMR][1000 genomes]
rs13402951	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13412192	1.00[AMR][1000 genomes]
rs13415422	1.00[AMR][1000 genomes]
rs13417047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3769762	1.00[YRI][hapmap]
rs3937746	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4602183	1.00[AMR][1000 genomes]
rs987620	1.00[AMR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20221400-20249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20230600-20248000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:20234800-20248200	Weak transcription	Psoas Muscle	Psoas
4	chr2:20235000-20248000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:20236600-20248000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:20237800-20249000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:20238000-20248200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr2:20238600-20248800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:20240600-20248000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr2:20240600-20248200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:20240600-20248200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:20240600-20248200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr2:20240600-20248200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr2:20240600-20248200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:20240600-20249200	Weak transcription	Colonic Mucosa	Colon
16	chr2:20240600-20249800	Weak transcription	Gastric	stomach
17	chr2:20240800-20248000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:20240800-20248000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr2:20240800-20248000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:20240800-20248000	Weak transcription	Fetal Kidney	kidney
21	chr2:20240800-20248200	Weak transcription	Brain Germinal Matrix	brain
22	chr2:20240800-20248400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr2:20240800-20248400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr2:20240800-20248400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr2:20240800-20248400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr2:20240800-20249000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr2:20240800-20249400	Weak transcription	Placenta	Placenta
28	chr2:20241000-20249000	Weak transcription	Fetal Thymus	thymus
29	chr2:20241400-20248000	Weak transcription	A549	lung
30	chr2:20241400-20248200	Weak transcription	Dnd41	blood
31	chr2:20241400-20248600	Weak transcription	Thymus	Thymus
32	chr2:20241400-20249600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr2:20241600-20248800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:20241600-20250400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:20242200-20248000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr2:20242200-20249400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr2:20242600-20248000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr2:20242600-20248200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr2:20242600-20248400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr2:20243000-20248000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr2:20244000-20248000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr2:20244000-20248200	Weak transcription	Fetal Muscle Leg	muscle
43	chr2:20244000-20248200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr2:20244000-20249400	Weak transcription	Pancreas	Pancrea
45	chr2:20244000-20249800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr2:20244000-20250000	Weak transcription	Spleen	Spleen
47	chr2:20244200-20248000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr2:20244200-20248200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr2:20244200-20248200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr2:20244200-20248200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links