Variant report

Variant	rs13412576
Chromosome Location	chr2:20290295-20290296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20268478..20271036-chr2:20289525..20291447,2	MCF-7	breast:
2	chr2:20289699..20292359-chr2:20294103..20297412,3	MCF-7	breast:
3	chr2:20249442..20252213-chr2:20288263..20291117,3	K562	blood:
4	chr2:20272065..20273693-chr2:20288662..20290596,2	MCF-7	breast:
5	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:
6	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
7	chr2:20277155..20282170-chr2:20290246..20293600,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

rs_ID	r²[population]
rs10180898	1.00[YRI][hapmap]
rs10191137	0.83[AMR][1000 genomes]
rs10201104	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10210388	0.80[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13386531	1.00[YRI][hapmap]
rs13396075	1.00[YRI][hapmap]
rs13412192	1.00[YRI][hapmap]
rs13415422	1.00[YRI][hapmap]
rs13421480	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13433062	0.80[YRI][hapmap]
rs9306888	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs988317	0.83[AMR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20280800-20291000	Weak transcription	A549	lung
2	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:20282400-20290400	Weak transcription	Placenta	Placenta
4	chr2:20282800-20290600	Weak transcription	Hela-S3	cervix
5	chr2:20286200-20290400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:20286600-20290400	Weak transcription	HSMMtube	muscle
7	chr2:20286800-20290400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:20288800-20290400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:20288800-20290400	Weak transcription	NHDF-Ad	bronchial
10	chr2:20288800-20290800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:20288800-20291400	Weak transcription	Brain Anterior Caudate	brain
12	chr2:20288800-20293200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:20288800-20293200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:20289200-20290600	Weak transcription	HepG2	liver
15	chr2:20289200-20293200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:20289600-20290800	Enhancers	K562	blood
17	chr2:20289600-20291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:20289800-20290800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:20289800-20293400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr2:20290000-20290800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:20290000-20290800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:20290000-20291000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:20290000-20291400	Enhancers	Fetal Muscle Trunk	muscle
24	chr2:20290000-20291800	Enhancers	Fetal Muscle Leg	muscle
25	chr2:20290000-20291800	Enhancers	Ovary	ovary
26	chr2:20290000-20293000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr2:20290000-20294400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:20290200-20290600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:20290200-20291200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr2:20290200-20291400	Weak transcription	Psoas Muscle	Psoas

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