Variant report

Variant	rs10194398
Chromosome Location	chr2:141653384-141653385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10185560	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10189583	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10496855	0.84[ASN][1000 genomes]
rs12987572	0.84[ASN][1000 genomes]
rs12989752	0.90[ASN][1000 genomes]
rs13001345	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13021153	0.84[ASN][1000 genomes]
rs13024879	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13026491	0.84[ASN][1000 genomes]
rs17518049	0.84[ASN][1000 genomes]
rs1963862	0.84[EUR][1000 genomes]
rs34386576	0.90[ASN][1000 genomes]
rs67402821	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141648800-141654800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:141649200-141661800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:141650200-141654200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:141651000-141653400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:141651600-141653400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:141652800-141653400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr2:141652800-141653400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr2:141653000-141653400	Active TSS	H9 Cell Line	embryonic stem cell
9	chr2:141653000-141653400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr2:141653000-141653600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:141653200-141653400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr2:141653200-141653400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr2:141653200-141653600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr2:141653200-141653600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:141653200-141653600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:141653200-141653600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:141653200-141654200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:141653200-141656200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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