Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10189583	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10194398	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10496855	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs12472481	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12691580	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12987572	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs12989752	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12993423	1.00[CHB][hapmap]
rs12999130	1.00[CHB][hapmap]
rs13001345	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13006054	1.00[CHB][hapmap]
rs13007335	1.00[CHB][hapmap]
rs13007422	1.00[CHB][hapmap]
rs13013928	1.00[CHB][hapmap]
rs13021153	0.84[ASN][1000 genomes]
rs13022675	1.00[CHB][hapmap]
rs13024879	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13026491	0.84[ASN][1000 genomes]
rs1366801	0.83[CEU][hapmap]
rs1429346	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1549709	0.82[CEU][hapmap]
rs17518049	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1963862	0.84[EUR][1000 genomes]
rs2380945	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34386576	0.90[ASN][1000 genomes]
rs67402821	0.84[ASN][1000 genomes]
rs7562670	0.87[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141648800-141654800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:141649200-141661800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:141653200-141656200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:141653600-141654800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:141653600-141662800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:141654400-141654800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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