Variant report
| Variant | rs13006054 |
|---|---|
| Chromosome Location | chr2:141610034-141610035 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10185560 | 1.00[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs10189583 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs10194398 | 0.80[ASN][1000 genomes] |
| rs10496855 | 1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs12472481 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12691580 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap] |
| rs12987572 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs12989752 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs12993423 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12999130 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13001345 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[ASN][1000 genomes] |
| rs13007335 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
| rs13007422 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13013928 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13021153 | 0.97[ASN][1000 genomes] |
| rs13022675 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13024879 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs13026491 | 0.97[ASN][1000 genomes] |
| rs1429346 | 1.00[CHB][hapmap] |
| rs17518049 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs2380945 | 1.00[CHB][hapmap] |
| rs34386576 | 0.90[ASN][1000 genomes] |
| rs67402821 | 0.97[ASN][1000 genomes] |
| rs7562670 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583198 | chr2:141510791-142150620 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003008 | chr2:141518795-141763505 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
