Variant report

Variant	rs1429346
Chromosome Location	chr2:141667670-141667671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10185560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10189583	1.00[CHB][hapmap]
rs10496855	1.00[CHB][hapmap]
rs12472481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12691580	1.00[CHB][hapmap]
rs12987572	1.00[CHB][hapmap]
rs12989752	1.00[CHB][hapmap]
rs12993423	1.00[CHB][hapmap]
rs12999130	1.00[CHB][hapmap]
rs13001345	1.00[CHB][hapmap]
rs13006054	1.00[CHB][hapmap]
rs13007335	1.00[CHB][hapmap]
rs13007422	1.00[CHB][hapmap]
rs13013928	1.00[CHB][hapmap]
rs13022675	1.00[CHB][hapmap]
rs13024879	1.00[CHB][hapmap]
rs17518049	1.00[CHB][hapmap]
rs2380945	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7562670	1.00[CHB][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141663200-141668200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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