Variant report

Variant	rs67402821
Chromosome Location	chr2:141615771-141615772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10185560	0.84[ASN][1000 genomes]
rs10189583	0.93[ASN][1000 genomes]
rs10194398	0.84[ASN][1000 genomes]
rs10496855	1.00[ASN][1000 genomes]
rs12987572	1.00[ASN][1000 genomes]
rs12989752	0.93[ASN][1000 genomes]
rs12993423	0.82[ASN][1000 genomes]
rs13001345	1.00[ASN][1000 genomes]
rs13021153	1.00[ASN][1000 genomes]
rs13024879	1.00[ASN][1000 genomes]
rs13026491	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17518049	1.00[ASN][1000 genomes]
rs34386576	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141614400-141617800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:141615400-141615800	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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