Variant report

Variant	rs10195384
Chromosome Location	chr2:116260808-116260809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10194608	0.83[ASN][1000 genomes]
rs10221735	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10221848	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10496493	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12623463	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13014804	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13401718	0.93[EUR][1000 genomes]
rs1375146	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1375147	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1448461	0.93[EUR][1000 genomes]
rs1597190	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1597191	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1666950	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17044463	0.82[ASN][1000 genomes]
rs17044656	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1839135	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1839136	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1839137	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1850446	0.93[EUR][1000 genomes]
rs1955167	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2166905	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2677296	0.90[EUR][1000 genomes]
rs2901335	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4378817	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4417722	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4530380	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55929901	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56347641	0.83[ASN][1000 genomes]
rs61080124	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6542263	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6542264	0.81[ASN][1000 genomes]
rs6707490	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6710379	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7562993	0.87[EUR][1000 genomes]
rs7566337	0.81[ASN][1000 genomes]
rs7573129	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7579023	0.81[ASN][1000 genomes]
rs7595751	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs843427	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs843428	0.87[EUR][1000 genomes]
rs843429	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs843432	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs979519	0.93[EUR][1000 genomes]
rs979520	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116260600-116261200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:116260800-116261600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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