Variant report

Variant	rs1839137
Chromosome Location	chr2:116234273-116234274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1006342	0.80[ASN][1000 genomes]
rs10194608	0.87[ASN][1000 genomes]
rs10195384	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10210316	0.82[ASN][1000 genomes]
rs10221735	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10221848	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10496493	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12373620	0.82[ASN][1000 genomes]
rs12466846	0.82[ASN][1000 genomes]
rs12623463	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13014804	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13401718	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13408150	0.92[ASN][1000 genomes]
rs1375146	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375147	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448461	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597191	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628917	0.80[AFR][1000 genomes]
rs1666950	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17044463	0.87[ASN][1000 genomes]
rs17044656	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1712004	0.83[ASN][1000 genomes]
rs1839135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850446	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1900749	0.82[ASN][1000 genomes]
rs1955167	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2008031	0.82[ASN][1000 genomes]
rs2012614	0.92[ASN][1000 genomes]
rs2166905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421273	0.82[ASN][1000 genomes]
rs2677296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2901335	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3962098	0.82[ASN][1000 genomes]
rs4378817	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4417722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4530380	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55929901	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56347641	0.87[ASN][1000 genomes]
rs61080124	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6542263	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542264	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6707490	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6710379	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6756582	0.82[ASN][1000 genomes]
rs708650	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs717522	0.92[ASN][1000 genomes]
rs72959740	0.92[ASN][1000 genomes]
rs72961521	0.82[ASN][1000 genomes]
rs7562993	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7563882	0.82[ASN][1000 genomes]
rs7565824	0.83[ASN][1000 genomes]
rs7566337	0.88[ASN][1000 genomes]
rs7573129	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7579023	0.88[ASN][1000 genomes]
rs7595751	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7600133	0.92[ASN][1000 genomes]
rs843384	0.85[ASN][1000 genomes]
rs843397	0.85[ASN][1000 genomes]
rs843407	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs843415	0.92[ASN][1000 genomes]
rs843427	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs843428	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs843429	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs843432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs979519	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs979520	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv963897	chr2:116230681-116241292	Enhancers ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116231400-116236600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:116232200-116234400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr2:116232400-116234400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr2:116233400-116235800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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