Variant report

Variant	rs1628917
Chromosome Location	chr2:116205686-116205687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13401718	0.81[ASN][1000 genomes]
rs13408150	0.87[ASN][1000 genomes]
rs1375146	0.81[AFR][1000 genomes]
rs1375147	0.81[AFR][1000 genomes]
rs1448461	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1597190	0.80[AFR][1000 genomes]
rs1597191	0.81[AFR][1000 genomes]
rs1839135	0.80[AFR][1000 genomes]
rs1839136	0.80[AFR][1000 genomes]
rs1839137	0.80[AFR][1000 genomes]
rs1850446	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2012614	0.87[ASN][1000 genomes]
rs2677296	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6710379	0.80[ASN][1000 genomes]
rs708650	0.97[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs717522	0.87[ASN][1000 genomes]
rs72959740	0.87[ASN][1000 genomes]
rs7562993	0.81[ASN][1000 genomes]
rs7600133	0.87[ASN][1000 genomes]
rs843384	0.80[ASN][1000 genomes]
rs843397	0.80[ASN][1000 genomes]
rs843407	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs843415	0.87[ASN][1000 genomes]
rs843427	0.91[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs843428	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs843429	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs843432	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs979519	0.81[AFR][1000 genomes]
rs979520	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116204000-116206400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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