Variant report

Variant	rs843415
Chromosome Location	chr2:116196986-116196987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF4	chr2:116196179-116197041	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
DPP10	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10221735	0.85[ASN][1000 genomes]
rs10496493	0.85[ASN][1000 genomes]
rs13014804	0.91[ASN][1000 genomes]
rs13401718	0.90[ASN][1000 genomes]
rs13408150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375146	0.92[ASN][1000 genomes]
rs1375147	0.92[ASN][1000 genomes]
rs1448461	0.90[ASN][1000 genomes]
rs1597190	0.92[ASN][1000 genomes]
rs1597191	0.92[ASN][1000 genomes]
rs1628917	0.87[ASN][1000 genomes]
rs1666950	0.92[ASN][1000 genomes]
rs17044463	0.81[ASN][1000 genomes]
rs1712004	0.91[ASN][1000 genomes]
rs1839135	0.92[ASN][1000 genomes]
rs1839136	0.92[ASN][1000 genomes]
rs1839137	0.92[ASN][1000 genomes]
rs1850446	0.90[ASN][1000 genomes]
rs1955167	0.91[ASN][1000 genomes]
rs2012614	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166905	0.92[ASN][1000 genomes]
rs2677296	0.90[ASN][1000 genomes]
rs2901335	0.92[ASN][1000 genomes]
rs4378817	0.85[ASN][1000 genomes]
rs4417722	0.92[ASN][1000 genomes]
rs4530380	0.91[ASN][1000 genomes]
rs55929901	0.84[ASN][1000 genomes]
rs61080124	0.90[ASN][1000 genomes]
rs6542263	0.92[ASN][1000 genomes]
rs6542264	0.92[ASN][1000 genomes]
rs6707490	0.85[ASN][1000 genomes]
rs6710379	0.89[ASN][1000 genomes]
rs708650	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs717522	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562993	0.90[ASN][1000 genomes]
rs7565824	0.91[ASN][1000 genomes]
rs7573129	0.90[ASN][1000 genomes]
rs7595751	0.85[ASN][1000 genomes]
rs7600133	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843384	0.93[ASN][1000 genomes]
rs843397	0.93[ASN][1000 genomes]
rs843407	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843427	0.89[ASN][1000 genomes]
rs843428	0.86[ASN][1000 genomes]
rs843429	0.89[ASN][1000 genomes]
rs843432	0.89[ASN][1000 genomes]
rs979519	0.90[ASN][1000 genomes]
rs979520	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3358207	chr2:116194582-116198780	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv2494215	chr2:116196176-116197917	Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	esv21323	chr2:116196284-116197112	Weak transcription ZNF genes & repeats Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116189400-116198800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:116194400-116198800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:116196600-116203400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:116196800-116203400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links