Variant report
| Variant | rs843397 |
|---|---|
| Chromosome Location | chr2:116186026-116186027 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs13014804 | 0.84[ASN][1000 genomes] |
| rs13401718 | 0.83[ASN][1000 genomes] |
| rs13408150 | 0.93[ASN][1000 genomes] |
| rs1375146 | 0.85[ASN][1000 genomes] |
| rs1375147 | 0.85[ASN][1000 genomes] |
| rs1448461 | 0.83[ASN][1000 genomes] |
| rs1597190 | 0.85[ASN][1000 genomes] |
| rs1597191 | 0.85[ASN][1000 genomes] |
| rs1628917 | 0.80[ASN][1000 genomes] |
| rs1666950 | 0.85[ASN][1000 genomes] |
| rs1712004 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1839135 | 0.85[ASN][1000 genomes] |
| rs1839136 | 0.85[ASN][1000 genomes] |
| rs1839137 | 0.85[ASN][1000 genomes] |
| rs1850446 | 0.83[ASN][1000 genomes] |
| rs1955167 | 0.84[ASN][1000 genomes] |
| rs2012614 | 0.93[ASN][1000 genomes] |
| rs2166905 | 0.85[ASN][1000 genomes] |
| rs2677296 | 0.83[ASN][1000 genomes] |
| rs2901335 | 0.85[ASN][1000 genomes] |
| rs4417722 | 0.84[ASN][1000 genomes] |
| rs4530380 | 0.84[ASN][1000 genomes] |
| rs61080124 | 0.83[ASN][1000 genomes] |
| rs6542263 | 0.85[ASN][1000 genomes] |
| rs6542264 | 0.85[ASN][1000 genomes] |
| rs6710379 | 0.82[ASN][1000 genomes] |
| rs708650 | 0.91[ASN][1000 genomes] |
| rs717522 | 0.93[ASN][1000 genomes] |
| rs72959740 | 0.93[ASN][1000 genomes] |
| rs7562993 | 0.83[ASN][1000 genomes] |
| rs7565824 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7573129 | 0.83[ASN][1000 genomes] |
| rs7600133 | 0.93[ASN][1000 genomes] |
| rs843384 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs843407 | 0.93[ASN][1000 genomes] |
| rs843415 | 0.93[ASN][1000 genomes] |
| rs843427 | 0.82[ASN][1000 genomes] |
| rs843429 | 0.82[ASN][1000 genomes] |
| rs843432 | 0.82[ASN][1000 genomes] |
| rs979519 | 0.83[ASN][1000 genomes] |
| rs979520 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874919 | chr2:116130709-116219686 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:116184200-116186400 | Strong transcription | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr2:116184800-116186200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
| 3 | chr2:116185400-116186400 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
