Variant report

Variant	rs843407
Chromosome Location	chr2:116200954-116200955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:116199546..116201909-chr2:116203745..116206534,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10221735	0.85[ASN][1000 genomes]
rs10496493	0.85[ASN][1000 genomes]
rs13014804	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13401718	0.90[ASN][1000 genomes]
rs13408150	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375146	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1375147	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1448461	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1597190	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1597191	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1628917	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1666950	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17044463	0.81[ASN][1000 genomes]
rs1712004	0.91[ASN][1000 genomes]
rs1839135	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1839136	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1839137	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1850446	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1955167	0.91[ASN][1000 genomes]
rs2012614	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166905	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2677296	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2901335	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4378817	0.85[ASN][1000 genomes]
rs4417722	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4530380	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55929901	0.84[ASN][1000 genomes]
rs61080124	0.90[ASN][1000 genomes]
rs6542263	0.92[ASN][1000 genomes]
rs6542264	0.92[ASN][1000 genomes]
rs6707490	0.85[ASN][1000 genomes]
rs6710379	0.89[ASN][1000 genomes]
rs708650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs717522	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959740	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562993	0.90[ASN][1000 genomes]
rs7565824	0.91[ASN][1000 genomes]
rs7573129	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7595751	0.85[ASN][1000 genomes]
rs7600133	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843384	0.93[ASN][1000 genomes]
rs843397	0.93[ASN][1000 genomes]
rs843415	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843427	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs843428	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs843429	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs843432	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs979519	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs979520	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116196600-116203400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:116196800-116203400	Weak transcription	Pancreas	Pancrea
3	chr2:116197800-116201200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:116198000-116201400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:116198800-116201800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:116199000-116201800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:116199400-116201200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:116200000-116201000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:116200000-116201000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:116200000-116201200	Weak transcription	Fetal Brain Male	brain
11	chr2:116200000-116202000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:116200200-116201400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:116200200-116201800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:116200400-116202000	Enhancers	HUES64 Cell Line	embryonic stem cell

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