Variant report

Variant	rs56347641
Chromosome Location	chr2:116321699-116321700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1006342	0.90[ASN][1000 genomes]
rs10194608	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195384	0.83[ASN][1000 genomes]
rs10210316	0.93[ASN][1000 genomes]
rs10221735	0.94[ASN][1000 genomes]
rs10221848	0.89[ASN][1000 genomes]
rs10496493	0.94[ASN][1000 genomes]
rs11888808	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12373620	0.93[ASN][1000 genomes]
rs12466846	0.93[ASN][1000 genomes]
rs12623463	1.00[ASN][1000 genomes]
rs13014804	0.88[ASN][1000 genomes]
rs13401718	0.85[ASN][1000 genomes]
rs1375146	0.87[ASN][1000 genomes]
rs1375147	0.87[ASN][1000 genomes]
rs1448461	0.85[ASN][1000 genomes]
rs1448465	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1597190	0.87[ASN][1000 genomes]
rs1597191	0.87[ASN][1000 genomes]
rs1666950	0.87[ASN][1000 genomes]
rs17044463	0.87[ASN][1000 genomes]
rs17044656	1.00[ASN][1000 genomes]
rs17044762	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1839135	0.87[ASN][1000 genomes]
rs1839136	0.87[ASN][1000 genomes]
rs1839137	0.87[ASN][1000 genomes]
rs1850446	0.85[ASN][1000 genomes]
rs1900749	0.93[ASN][1000 genomes]
rs1955167	0.88[ASN][1000 genomes]
rs2008031	0.93[ASN][1000 genomes]
rs2166905	0.87[ASN][1000 genomes]
rs2421273	0.93[ASN][1000 genomes]
rs2677296	0.85[ASN][1000 genomes]
rs2901335	0.87[ASN][1000 genomes]
rs2901337	0.86[ASN][1000 genomes]
rs3962098	0.92[ASN][1000 genomes]
rs4378817	0.94[ASN][1000 genomes]
rs4417722	0.87[ASN][1000 genomes]
rs4530380	0.88[ASN][1000 genomes]
rs55929901	0.93[ASN][1000 genomes]
rs61080124	0.89[ASN][1000 genomes]
rs6542263	0.87[ASN][1000 genomes]
rs6542264	0.87[ASN][1000 genomes]
rs6707490	0.94[ASN][1000 genomes]
rs6710379	0.86[ASN][1000 genomes]
rs6756582	0.93[ASN][1000 genomes]
rs72961521	0.93[ASN][1000 genomes]
rs7562993	0.85[ASN][1000 genomes]
rs7563882	0.93[ASN][1000 genomes]
rs7566337	0.88[ASN][1000 genomes]
rs7573129	0.87[ASN][1000 genomes]
rs7579023	0.88[ASN][1000 genomes]
rs7595751	0.94[ASN][1000 genomes]
rs843427	0.86[ASN][1000 genomes]
rs843428	0.84[ASN][1000 genomes]
rs843429	0.86[ASN][1000 genomes]
rs843432	0.86[ASN][1000 genomes]
rs979519	0.85[ASN][1000 genomes]
rs979520	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116318400-116322000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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