Variant report
| Variant | rs11888808 |
|---|---|
| Chromosome Location | chr2:116338442-116338443 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1006342 | 0.83[ASN][1000 genomes] |
| rs10194608 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10210316 | 0.85[ASN][1000 genomes] |
| rs10221735 | 0.87[ASN][1000 genomes] |
| rs10221848 | 0.81[ASN][1000 genomes] |
| rs10496493 | 0.87[ASN][1000 genomes] |
| rs10496499 | 0.82[ASN][1000 genomes] |
| rs12373620 | 0.85[ASN][1000 genomes] |
| rs12466846 | 0.85[ASN][1000 genomes] |
| rs12623463 | 0.92[ASN][1000 genomes] |
| rs13014804 | 0.81[ASN][1000 genomes] |
| rs1448465 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17044656 | 0.92[ASN][1000 genomes] |
| rs17044762 | 0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1900749 | 0.85[ASN][1000 genomes] |
| rs1955167 | 0.81[ASN][1000 genomes] |
| rs2008031 | 0.85[ASN][1000 genomes] |
| rs2421273 | 0.85[ASN][1000 genomes] |
| rs2901337 | 0.94[ASN][1000 genomes] |
| rs3962098 | 0.84[ASN][1000 genomes] |
| rs4378817 | 0.87[ASN][1000 genomes] |
| rs4530380 | 0.81[ASN][1000 genomes] |
| rs55929901 | 0.86[ASN][1000 genomes] |
| rs56347641 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs61080124 | 0.81[ASN][1000 genomes] |
| rs6707490 | 0.87[ASN][1000 genomes] |
| rs6756582 | 0.85[ASN][1000 genomes] |
| rs72961521 | 0.85[ASN][1000 genomes] |
| rs7563882 | 0.85[ASN][1000 genomes] |
| rs7566337 | 0.80[ASN][1000 genomes] |
| rs7573129 | 0.81[ASN][1000 genomes] |
| rs7579023 | 0.80[ASN][1000 genomes] |
| rs7595751 | 0.87[ASN][1000 genomes] |
| rs9973568 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014859 | chr2:116196951-116938584 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:116337600-116339600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr2:116338000-116340600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
