Variant report

Variant	rs2901337
Chromosome Location	chr2:116354344-116354345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10194608	0.86[ASN][1000 genomes]
rs10221735	0.80[ASN][1000 genomes]
rs10496493	0.80[ASN][1000 genomes]
rs10496499	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11888808	0.94[ASN][1000 genomes]
rs12623463	0.86[ASN][1000 genomes]
rs13396685	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1448465	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17044656	0.86[ASN][1000 genomes]
rs17044762	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4378817	0.80[ASN][1000 genomes]
rs56347641	0.86[ASN][1000 genomes]
rs6707490	0.80[ASN][1000 genomes]
rs7595751	0.80[ASN][1000 genomes]
rs9973568	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3388257	chr2:116348771-116365419	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116353600-116354400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr2:116353600-116354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:116353800-116357200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:116353800-116364000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:116354000-116354400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr2:116354000-116355000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:116354000-116355000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr2:116354000-116355000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr2:116354200-116354800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr2:116354200-116354800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:116354200-116355000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:116354200-116355000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr2:116354200-116355000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links