Variant report

Variant	rs10199137
Chromosome Location	chr2:37735381-37735382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37710296..37713273-chr2:37733233..37735732,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10198396	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10204024	0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs10865125	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11124586	0.88[ASN][1000 genomes]
rs1113496	0.92[ASN][1000 genomes]
rs11684461	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11686382	0.80[EUR][1000 genomes]
rs12151464	0.87[ASN][1000 genomes]
rs13000102	0.87[ASN][1000 genomes]
rs13009200	0.82[ASN][1000 genomes]
rs13387905	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13412538	0.88[ASN][1000 genomes]
rs17020823	0.85[ASN][1000 genomes]
rs17020835	0.88[ASN][1000 genomes]
rs2080387	0.87[ASN][1000 genomes]
rs2192942	0.90[ASN][1000 genomes]
rs2192943	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192944	0.89[ASN][1000 genomes]
rs2216117	0.87[ASN][1000 genomes]
rs2373108	0.84[ASN][1000 genomes]
rs2373109	0.87[ASN][1000 genomes]
rs2373110	0.87[ASN][1000 genomes]
rs4353628	0.96[ASN][1000 genomes]
rs4450582	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4503968	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4517954	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4670205	0.98[ASN][1000 genomes]
rs58694726	0.87[ASN][1000 genomes]
rs60691585	0.82[ASN][1000 genomes]
rs62135566	0.87[ASN][1000 genomes]
rs62135567	0.87[ASN][1000 genomes]
rs62135568	0.87[ASN][1000 genomes]
rs62135576	0.80[EUR][1000 genomes]
rs6544088	0.86[ASN][1000 genomes]
rs6708411	0.87[ASN][1000 genomes]
rs6724538	0.88[ASN][1000 genomes]
rs6735123	0.98[ASN][1000 genomes]
rs6746868	0.89[ASN][1000 genomes]
rs6753503	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6757678	0.87[ASN][1000 genomes]
rs72793802	0.81[EUR][1000 genomes]
rs7557408	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7561053	0.98[ASN][1000 genomes]
rs7571760	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7574012	0.88[ASN][1000 genomes]
rs7582204	0.89[ASN][1000 genomes]
rs7588494	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7593333	0.87[ASN][1000 genomes]
rs7595792	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs960902	0.90[ASN][1000 genomes]
rs9941697	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37709600-37738000	Weak transcription	Liver	Liver
2	chr2:37731000-37735800	Enhancers	Fetal Stomach	stomach
3	chr2:37732000-37735600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:37732200-37735600	Enhancers	Fetal Muscle Leg	muscle
5	chr2:37732200-37735600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:37732400-37736000	Enhancers	Colon Smooth Muscle	Colon
7	chr2:37732800-37735600	Enhancers	Rectal Smooth Muscle	rectum
8	chr2:37733000-37735800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:37733200-37735400	Weak transcription	Psoas Muscle	Psoas
10	chr2:37733400-37735400	Enhancers	Fetal Lung	lung
11	chr2:37733600-37735400	Enhancers	Brain Germinal Matrix	brain
12	chr2:37733600-37735600	Enhancers	Aorta	Aorta
13	chr2:37733600-37735600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr2:37734400-37735800	Enhancers	Stomach Smooth Muscle	stomach
15	chr2:37734600-37736400	Enhancers	Fetal Heart	heart
16	chr2:37735000-37735400	Enhancers	Ovary	ovary
17	chr2:37735200-37735800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:37735200-37735800	Enhancers	Left Ventricle	heart
19	chr2:37735200-37735800	Enhancers	HSMMtube	muscle

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