Variant report

Variant	rs17020835
Chromosome Location	chr2:37728998-37728999
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37728444..37730701-chr2:37746195..37748553,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10198396	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10199137	0.88[ASN][1000 genomes]
rs10204024	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10865125	0.86[ASN][1000 genomes]
rs11124585	0.81[EUR][1000 genomes]
rs11124586	0.97[ASN][1000 genomes]
rs1113496	0.95[ASN][1000 genomes]
rs11684461	0.87[ASN][1000 genomes]
rs12151464	0.94[ASN][1000 genomes]
rs12992054	0.84[EUR][1000 genomes]
rs12992431	0.82[EUR][1000 genomes]
rs12992720	0.84[EUR][1000 genomes]
rs12993204	0.84[EUR][1000 genomes]
rs13000102	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13009200	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13016394	0.84[EUR][1000 genomes]
rs13016831	0.84[EUR][1000 genomes]
rs13387905	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13412538	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020823	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2080387	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192942	0.97[ASN][1000 genomes]
rs2192943	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192944	0.98[ASN][1000 genomes]
rs2216117	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2373108	0.93[ASN][1000 genomes]
rs2373109	0.96[ASN][1000 genomes]
rs2373110	0.96[ASN][1000 genomes]
rs34130356	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36046846	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4353628	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4450582	0.96[ASN][1000 genomes]
rs4503968	0.96[ASN][1000 genomes]
rs4517954	0.96[ASN][1000 genomes]
rs4670205	0.86[ASN][1000 genomes]
rs58367831	0.84[EUR][1000 genomes]
rs58694726	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60691585	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62135565	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62135566	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62135567	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62135568	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6544088	0.83[EUR][1000 genomes]
rs6708411	0.96[ASN][1000 genomes]
rs6724538	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6735123	0.87[ASN][1000 genomes]
rs6746868	0.98[ASN][1000 genomes]
rs6753503	0.87[ASN][1000 genomes]
rs6757678	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7557408	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7561053	0.86[ASN][1000 genomes]
rs7562026	0.83[EUR][1000 genomes]
rs7562161	0.84[EUR][1000 genomes]
rs7571760	0.86[ASN][1000 genomes]
rs7574012	0.97[ASN][1000 genomes]
rs7582204	0.98[ASN][1000 genomes]
rs7588494	0.86[ASN][1000 genomes]
rs7592144	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7593333	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7595792	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960902	0.97[ASN][1000 genomes]
rs9941697	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37709600-37738000	Weak transcription	Liver	Liver
2	chr2:37727200-37729200	Enhancers	NHDF-Ad	bronchial
3	chr2:37727800-37729000	Weak transcription	NHLF	lung
4	chr2:37727800-37733200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:37728400-37733200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:37728800-37729200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr2:37728800-37731000	Weak transcription	Fetal Heart	heart

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