Variant report

Variant	rs10204024
Chromosome Location	chr2:37732029-37732030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:149223828..149224363-chr2:37731909..37732409,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10198396	0.89[ASN][1000 genomes]
rs10199137	0.91[ASN][1000 genomes]
rs10865125	0.89[ASN][1000 genomes]
rs11124586	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1113496	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11684461	0.90[ASN][1000 genomes]
rs12151464	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13000102	0.95[ASN][1000 genomes]
rs13009200	0.90[ASN][1000 genomes]
rs13387905	0.96[ASN][1000 genomes]
rs13412538	0.96[ASN][1000 genomes]
rs17020823	0.93[ASN][1000 genomes]
rs17020835	0.96[ASN][1000 genomes]
rs2080387	0.95[ASN][1000 genomes]
rs2192940	0.81[EUR][1000 genomes]
rs2192942	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192943	0.98[ASN][1000 genomes]
rs2192944	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192949	0.82[EUR][1000 genomes]
rs2216117	0.95[ASN][1000 genomes]
rs2373108	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2373109	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2373110	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34130356	0.80[ASN][1000 genomes]
rs4353628	0.88[ASN][1000 genomes]
rs4450582	0.99[ASN][1000 genomes]
rs4503968	0.99[ASN][1000 genomes]
rs4517954	0.99[ASN][1000 genomes]
rs4670205	0.90[ASN][1000 genomes]
rs58694726	0.94[ASN][1000 genomes]
rs60691585	0.90[ASN][1000 genomes]
rs62135565	0.86[ASN][1000 genomes]
rs62135566	0.95[ASN][1000 genomes]
rs62135567	0.95[ASN][1000 genomes]
rs62135568	0.95[ASN][1000 genomes]
rs6708411	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6724538	0.96[ASN][1000 genomes]
rs6735123	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6746868	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6753503	0.90[ASN][1000 genomes]
rs6757678	0.95[ASN][1000 genomes]
rs7557408	0.88[ASN][1000 genomes]
rs7561053	0.90[ASN][1000 genomes]
rs7571760	0.89[ASN][1000 genomes]
rs7574012	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7582204	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7588494	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7593333	0.94[ASN][1000 genomes]
rs7595792	0.96[ASN][1000 genomes]
rs960902	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9941697	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37709600-37738000	Weak transcription	Liver	Liver
2	chr2:37727800-37733200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:37728400-37733200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:37729200-37733200	Weak transcription	NHDF-Ad	bronchial
5	chr2:37731000-37733200	Enhancers	Fetal Heart	heart
6	chr2:37731000-37735800	Enhancers	Fetal Stomach	stomach
7	chr2:37731400-37732400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:37731600-37733400	Enhancers	HSMMtube	muscle
9	chr2:37732000-37733000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr2:37732000-37734400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:37732000-37734400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:37732000-37735600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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