Variant report

Variant	rs10199263
Chromosome Location	chr2:100574692-100574693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11883471	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11900758	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023314	1.00[EUR][1000 genomes]
rs34506074	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55983621	1.00[EUR][1000 genomes]
rs59644088	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59824534	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6707538	0.90[EUR][1000 genomes]
rs6758652	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73964368	1.00[EUR][1000 genomes]
rs73964369	1.00[EUR][1000 genomes]
rs73964370	1.00[EUR][1000 genomes]
rs73964371	0.90[EUR][1000 genomes]
rs73964373	1.00[EUR][1000 genomes]
rs73964374	1.00[EUR][1000 genomes]
rs73964375	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964377	1.00[EUR][1000 genomes]
rs73964378	1.00[EUR][1000 genomes]
rs73964380	1.00[EUR][1000 genomes]
rs73964383	1.00[EUR][1000 genomes]
rs73964385	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964387	1.00[EUR][1000 genomes]
rs73964389	0.91[EUR][1000 genomes]
rs73964391	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964394	1.00[EUR][1000 genomes]
rs73964395	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964396	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964397	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964401	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7606572	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1003114	chr2:100480432-100601586	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100541800-100575000	Weak transcription	Brain Germinal Matrix	brain
2	chr2:100547600-100577200	Weak transcription	Thymus	Thymus
3	chr2:100550800-100577000	Weak transcription	Spleen	Spleen
4	chr2:100550800-100618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:100558800-100576200	Weak transcription	Fetal Lung	lung
6	chr2:100559800-100577000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:100560600-100577000	Weak transcription	Right Atrium	heart
8	chr2:100563200-100625400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:100564800-100577000	Weak transcription	Ovary	ovary
10	chr2:100564800-100617000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:100567800-100577200	Weak transcription	Fetal Thymus	thymus
12	chr2:100569600-100584000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:100570600-100577200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:100570600-100598400	Weak transcription	Dnd41	blood
15	chr2:100573000-100577200	Weak transcription	Adipose Nuclei	Adipose
16	chr2:100573200-100574800	Genic enhancers	Primary B cells from peripheral blood	blood
17	chr2:100573400-100574800	Enhancers	Fetal Brain Female	brain
18	chr2:100573400-100578400	Enhancers	Fetal Brain Male	brain
19	chr2:100573600-100574800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:100573600-100574800	Strong transcription	Primary hematopoietic stem cells	blood
21	chr2:100573800-100576200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr2:100573800-100599600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr2:100574000-100576400	Weak transcription	Fetal Heart	heart
24	chr2:100574000-100578000	Strong transcription	Primary B cells from cord blood	blood
25	chr2:100574200-100574800	Strong transcription	Primary T cells from cord blood	blood
26	chr2:100574200-100576200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:100574400-100577000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:100574400-100591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:100574600-100577200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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