Variant report

Variant	rs73964394
Chromosome Location	chr2:100600852-100600853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10199263	1.00[EUR][1000 genomes]
rs11883471	1.00[EUR][1000 genomes]
rs11900758	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023314	1.00[EUR][1000 genomes]
rs34506074	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55983621	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59644088	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59824534	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6707538	0.90[EUR][1000 genomes]
rs6758652	0.91[EUR][1000 genomes]
rs73964368	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964369	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964370	1.00[EUR][1000 genomes]
rs73964371	0.90[EUR][1000 genomes]
rs73964373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964375	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964378	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964380	1.00[EUR][1000 genomes]
rs73964383	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964385	1.00[EUR][1000 genomes]
rs73964387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73964391	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964395	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964396	1.00[EUR][1000 genomes]
rs73964397	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964401	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7606572	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1003114	chr2:100480432-100601586	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100550800-100618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:100563200-100625400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:100564800-100617000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:100577400-100618200	Weak transcription	Aorta	Aorta
5	chr2:100577800-100603400	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:100577800-100607400	Weak transcription	Thymus	Thymus
7	chr2:100577800-100623000	Weak transcription	Adipose Nuclei	Adipose
8	chr2:100577800-100623000	Weak transcription	Brain Angular Gyrus	brain
9	chr2:100578000-100616200	Weak transcription	Fetal Thymus	thymus
10	chr2:100582400-100608000	Weak transcription	Fetal Stomach	stomach
11	chr2:100583200-100608000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr2:100587400-100601200	Weak transcription	Left Ventricle	heart
13	chr2:100587400-100623000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr2:100587400-100623000	Weak transcription	Spleen	Spleen
15	chr2:100590400-100618000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:100591000-100607200	Weak transcription	Brain Germinal Matrix	brain
17	chr2:100591400-100604200	Weak transcription	Fetal Heart	heart
18	chr2:100591400-100605000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:100592200-100601400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:100592600-100601400	Strong transcription	Primary B cells from cord blood	blood
21	chr2:100592600-100626400	Weak transcription	NH-A	brain
22	chr2:100594600-100623000	Weak transcription	Gastric	stomach
23	chr2:100595800-100601200	Weak transcription	Fetal Brain Female	brain
24	chr2:100596600-100604600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:100597000-100601200	Weak transcription	Osteobl	bone
26	chr2:100597200-100601200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:100598600-100604600	Weak transcription	Right Atrium	heart
28	chr2:100598600-100623000	Weak transcription	Lung	lung
29	chr2:100598800-100603600	Weak transcription	Primary T cells from cord blood	blood
30	chr2:100599000-100614000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:100599200-100601200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:100599400-100602200	Enhancers	Fetal Lung	lung
33	chr2:100599600-100602200	Enhancers	Fetal Kidney	kidney
34	chr2:100599800-100606600	Weak transcription	Dnd41	blood
35	chr2:100600200-100604800	Weak transcription	Ovary	ovary
36	chr2:100600200-100607600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr2:100600400-100616800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:100600600-100602200	Enhancers	Fetal Brain Male	brain
39	chr2:100600800-100601000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:100600800-100602000	Enhancers	NHDF-Ad	bronchial
41	chr2:100600800-100602200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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