Variant report

Variant	rs59644088
Chromosome Location	chr2:100609702-100609703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10199263	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11883471	1.00[EUR][1000 genomes]
rs11900758	1.00[EUR][1000 genomes]
rs17023314	1.00[EUR][1000 genomes]
rs34506074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55983621	1.00[EUR][1000 genomes]
rs59824534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6707538	0.90[EUR][1000 genomes]
rs6758652	0.91[EUR][1000 genomes]
rs73964368	1.00[EUR][1000 genomes]
rs73964369	1.00[EUR][1000 genomes]
rs73964370	1.00[EUR][1000 genomes]
rs73964371	0.90[EUR][1000 genomes]
rs73964373	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964374	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964375	1.00[EUR][1000 genomes]
rs73964377	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964378	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964380	1.00[EUR][1000 genomes]
rs73964383	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964385	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964387	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964389	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73964391	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964394	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964396	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73964401	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7606572	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100550800-100618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:100563200-100625400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:100564800-100617000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:100577400-100618200	Weak transcription	Aorta	Aorta
5	chr2:100577800-100623000	Weak transcription	Adipose Nuclei	Adipose
6	chr2:100577800-100623000	Weak transcription	Brain Angular Gyrus	brain
7	chr2:100578000-100616200	Weak transcription	Fetal Thymus	thymus
8	chr2:100587400-100623000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr2:100587400-100623000	Weak transcription	Spleen	Spleen
10	chr2:100590400-100618000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:100592600-100626400	Weak transcription	NH-A	brain
12	chr2:100594600-100623000	Weak transcription	Gastric	stomach
13	chr2:100598600-100623000	Weak transcription	Lung	lung
14	chr2:100599000-100614000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:100600400-100616800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:100603400-100611600	Strong transcription	Primary B cells from cord blood	blood
17	chr2:100605000-100614200	Weak transcription	Fetal Brain Female	brain
18	chr2:100605200-100615200	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:100605200-100627200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:100605400-100615600	Weak transcription	Primary T cells from cord blood	blood
21	chr2:100605400-100623000	Weak transcription	Ovary	ovary
22	chr2:100605400-100627800	Weak transcription	Right Ventricle	heart
23	chr2:100605600-100614600	Weak transcription	Fetal Brain Male	brain
24	chr2:100605800-100615000	Weak transcription	Fetal Kidney	kidney
25	chr2:100607400-100609800	Strong transcription	Fetal Lung	lung
26	chr2:100607400-100623000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:100607800-100622800	Weak transcription	Brain Germinal Matrix	brain
28	chr2:100608000-100613400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr2:100608000-100613400	Weak transcription	Dnd41	blood
30	chr2:100608000-100613600	Weak transcription	Thymus	Thymus
31	chr2:100609600-100610800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr2:100609600-100613200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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