Variant report

Variant	rs10199362
Chromosome Location	chr2:21504149-21504150
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21503800..21505769-chr2:21511701..21513411,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13425708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17042060	0.83[AMR][1000 genomes]
rs57096036	1.00[AMR][1000 genomes]
rs58126148	1.00[AMR][1000 genomes]
rs59635491	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3391805	chr2:21502047-21506645	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21492000-21504600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:21493400-21511200	Weak transcription	Aorta	Aorta
3	chr2:21493800-21509000	Weak transcription	K562	blood
4	chr2:21494200-21504800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:21494200-21506200	Weak transcription	Right Atrium	heart
6	chr2:21494600-21504400	Weak transcription	Brain Anterior Caudate	brain
7	chr2:21497800-21504800	Weak transcription	Spleen	Spleen
8	chr2:21498600-21504600	Weak transcription	Brain Angular Gyrus	brain
9	chr2:21499800-21506600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:21500400-21504400	Weak transcription	Brain Substantia Nigra	brain
11	chr2:21500800-21504400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:21501400-21504600	Weak transcription	Fetal Intestine Small	intestine
13	chr2:21502200-21504400	Enhancers	Fetal Heart	heart
14	chr2:21502200-21506600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:21503000-21504800	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:21503200-21504200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:21503200-21504800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:21503200-21504800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:21503200-21505200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:21503200-21511800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:21503800-21504200	Enhancers	Left Ventricle	heart
22	chr2:21503800-21504400	Enhancers	HMEC	breast
23	chr2:21503800-21505400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:21503800-21505400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr2:21504000-21504200	Enhancers	Fetal Intestine Large	intestine
26	chr2:21504000-21504400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr2:21504000-21504600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:21504000-21505000	Enhancers	Fetal Brain Male	brain

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