Variant report

Variant	rs58126148
Chromosome Location	chr2:21490176-21490177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10199362	1.00[AMR][1000 genomes]
rs13425708	1.00[AMR][1000 genomes]
rs17042060	0.83[AMR][1000 genomes]
rs57096036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59635491	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519215	chr2:21473751-21502727	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv523572	chr2:21489083-21493269	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
5	nsv518468	chr2:21489083-21502727	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21479000-21490400	Weak transcription	Spleen	Spleen
2	chr2:21479400-21494800	Enhancers	Brain Substantia Nigra	brain
3	chr2:21481600-21490200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:21483400-21490600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:21483600-21490200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:21485000-21490400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:21488800-21490400	Weak transcription	K562	blood
8	chr2:21488800-21490800	Weak transcription	Aorta	Aorta
9	chr2:21489000-21492600	Enhancers	Ovary	ovary
10	chr2:21489600-21491000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr2:21489600-21495400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:21489800-21492000	Enhancers	Pancreas	Pancrea
13	chr2:21489800-21492200	Enhancers	Brain Hippocampus Middle	brain
14	chr2:21489800-21492400	Enhancers	Brain Angular Gyrus	brain
15	chr2:21489800-21494200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:21489800-21494600	Enhancers	Brain Anterior Caudate	brain
17	chr2:21489800-21494600	Enhancers	Brain Cingulate Gyrus	brain
18	chr2:21489800-21495200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:21490000-21490200	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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