Variant report

Variant	rs10199503
Chromosome Location	chr2:186998814-186998815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:186994332..186996558-chr2:186996994..186999214,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10167916	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10169303	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169495	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10170460	1.00[ASN][1000 genomes]
rs10172385	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177674	0.90[EUR][1000 genomes]
rs10178380	1.00[ASN][1000 genomes]
rs10188935	1.00[ASN][1000 genomes]
rs10190643	1.00[ASN][1000 genomes]
rs10194279	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195894	1.00[ASN][1000 genomes]
rs10196464	1.00[ASN][1000 genomes]
rs10199590	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201678	1.00[ASN][1000 genomes]
rs10202753	1.00[ASN][1000 genomes]
rs10202978	1.00[ASN][1000 genomes]
rs10206032	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206285	1.00[ASN][1000 genomes]
rs10208050	1.00[ASN][1000 genomes]
rs10208364	1.00[ASN][1000 genomes]
rs10208438	1.00[ASN][1000 genomes]
rs10208476	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13384032	1.00[ASN][1000 genomes]
rs13390957	1.00[ASN][1000 genomes]
rs13403627	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413555	1.00[ASN][1000 genomes]
rs13414293	1.00[ASN][1000 genomes]
rs13417380	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418456	1.00[ASN][1000 genomes]
rs13421890	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423512	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13424471	1.00[ASN][1000 genomes]
rs13430022	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34468721	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103051	1.00[ASN][1000 genomes]
rs60597870	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197162	1.00[ASN][1000 genomes]
rs62197163	1.00[ASN][1000 genomes]
rs62197188	1.00[ASN][1000 genomes]
rs62197196	1.00[ASN][1000 genomes]
rs62197200	1.00[ASN][1000 genomes]
rs62197201	1.00[ASN][1000 genomes]
rs62197202	1.00[ASN][1000 genomes]
rs62197203	1.00[ASN][1000 genomes]
rs62197214	1.00[ASN][1000 genomes]
rs62197216	1.00[ASN][1000 genomes]
rs62197217	1.00[ASN][1000 genomes]
rs62197218	1.00[ASN][1000 genomes]
rs62197222	1.00[ASN][1000 genomes]
rs62197223	1.00[ASN][1000 genomes]
rs62197226	1.00[ASN][1000 genomes]
rs62197227	1.00[ASN][1000 genomes]
rs62197253	1.00[ASN][1000 genomes]
rs62197255	1.00[ASN][1000 genomes]
rs62197257	1.00[ASN][1000 genomes]
rs62198560	1.00[ASN][1000 genomes]
rs62198978	1.00[ASN][1000 genomes]
rs62198988	1.00[ASN][1000 genomes]
rs62199016	1.00[ASN][1000 genomes]
rs62199017	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199018	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199020	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199022	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199023	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199039	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199040	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199047	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199048	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73981042	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73981045	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1002243	chr2:186692815-187150225	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv536077	chr2:186692815-187150225	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv875547	chr2:186798249-187014815	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv584030	chr2:186915437-187001076	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1003369	chr2:186980675-187133740	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186992200-186999200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:186996000-187000400	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:186997600-187000200	Weak transcription	HepG2	liver
4	chr2:186998000-187003600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links