Variant report

Variant	rs13423512
Chromosome Location	chr2:186965143-186965144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FSIP2-4	chr2:186964372-186965726	NONHSAT075984

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10167916	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169495	0.91[EUR][1000 genomes]
rs10170460	1.00[ASN][1000 genomes]
rs10172385	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10175904	0.91[AMR][1000 genomes]
rs10177674	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10188935	1.00[ASN][1000 genomes]
rs10190643	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10194279	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195894	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196464	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199503	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199590	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202753	1.00[ASN][1000 genomes]
rs10202978	1.00[ASN][1000 genomes]
rs10206032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206285	1.00[ASN][1000 genomes]
rs10208050	1.00[ASN][1000 genomes]
rs10208364	1.00[ASN][1000 genomes]
rs10208438	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10208476	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390957	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13398061	0.91[AMR][1000 genomes]
rs13403627	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413555	1.00[ASN][1000 genomes]
rs13414293	1.00[ASN][1000 genomes]
rs13417380	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418456	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13421890	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13424471	1.00[ASN][1000 genomes]
rs13430022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28804162	0.91[AMR][1000 genomes]
rs34468721	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103051	1.00[ASN][1000 genomes]
rs55908314	0.91[AMR][1000 genomes]
rs60597870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197162	1.00[ASN][1000 genomes]
rs62197163	1.00[ASN][1000 genomes]
rs62197188	1.00[ASN][1000 genomes]
rs62197196	1.00[ASN][1000 genomes]
rs62197200	1.00[ASN][1000 genomes]
rs62197201	1.00[ASN][1000 genomes]
rs62197202	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197203	1.00[ASN][1000 genomes]
rs62197214	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197216	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197217	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197218	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197222	1.00[ASN][1000 genomes]
rs62197223	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197226	1.00[ASN][1000 genomes]
rs62197227	1.00[ASN][1000 genomes]
rs62197253	1.00[ASN][1000 genomes]
rs62198978	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198988	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199016	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199017	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199018	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199022	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199023	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199039	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199047	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199048	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73980894	0.83[AMR][1000 genomes]
rs73981042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73981045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1002243	chr2:186692815-187150225	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv536077	chr2:186692815-187150225	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv875547	chr2:186798249-187014815	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv875550	chr2:186807268-186965143	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv875551	chr2:186844579-186965143	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv584028	chr2:186851224-186965143	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv584029	chr2:186851224-186971595	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv584030	chr2:186915437-187001076	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1014798	chr2:186933314-186965502	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186956000-186968200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:186962600-186973400	Weak transcription	Pancreas	Pancrea
3	chr2:186963000-186965200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:186963400-186965200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:186963800-186965200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:186964400-186965600	Enhancers	Fetal Brain Male	brain
7	chr2:186964800-186966000	Weak transcription	Left Ventricle	heart
8	chr2:186964800-186967800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:186965000-186965200	Enhancers	Fetal Brain Female	brain
10	chr2:186965000-186967000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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