Variant report

Variant	rs13417380
Chromosome Location	chr2:186950923-186950924
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FSIP2-4	chr2:186947780-186951158	NONHSAT075984

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10167916	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169303	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169495	0.91[EUR][1000 genomes]
rs10170460	1.00[ASN][1000 genomes]
rs10172385	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10175904	1.00[AMR][1000 genomes]
rs10177674	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10188935	1.00[ASN][1000 genomes]
rs10189873	0.84[AMR][1000 genomes]
rs10190643	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10194279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195894	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10196464	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199503	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199590	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202753	1.00[ASN][1000 genomes]
rs10202978	1.00[ASN][1000 genomes]
rs10206032	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206285	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10208050	1.00[ASN][1000 genomes]
rs10208364	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10208438	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10208476	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389837	0.84[AMR][1000 genomes]
rs13390957	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13391318	0.84[AMR][1000 genomes]
rs13398061	1.00[AMR][1000 genomes]
rs13403627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404172	0.84[AMR][1000 genomes]
rs13413555	1.00[ASN][1000 genomes]
rs13414293	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13414549	0.84[AMR][1000 genomes]
rs13421613	0.84[AMR][1000 genomes]
rs13421890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423512	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13424471	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13430022	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827613	0.84[AMR][1000 genomes]
rs28804162	1.00[AMR][1000 genomes]
rs34468721	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103051	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55908314	1.00[AMR][1000 genomes]
rs60597870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197162	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197163	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197188	1.00[ASN][1000 genomes]
rs62197192	0.81[AMR][1000 genomes]
rs62197196	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197197	0.84[AMR][1000 genomes]
rs62197200	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197201	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197202	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197203	1.00[ASN][1000 genomes]
rs62197214	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197216	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197217	1.00[ASN][1000 genomes]
rs62197218	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197222	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197223	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197225	0.81[AMR][1000 genomes]
rs62197226	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62197227	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62198978	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62198988	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199016	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199017	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199020	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199022	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199023	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199039	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199040	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199047	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62199048	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73980894	0.91[AMR][1000 genomes]
rs73981042	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73981045	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1002243	chr2:186692815-187150225	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv536077	chr2:186692815-187150225	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv875547	chr2:186798249-187014815	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv875550	chr2:186807268-186965143	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv875551	chr2:186844579-186965143	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1001737	chr2:186847770-186953324	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1007803	chr2:186847770-186959288	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv431835	chr2:186848494-186960817	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1005089	chr2:186848664-186953324	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv584027	chr2:186851224-186954427	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv584028	chr2:186851224-186965143	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv584029	chr2:186851224-186971595	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv584030	chr2:186915437-187001076	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv1014798	chr2:186933314-186965502	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186949800-186951200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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