Variant report

Variant	rs62197225
Chromosome Location	chr2:187156450-187156451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10164423	0.85[EUR][1000 genomes]
rs10170460	0.98[EUR][1000 genomes]
rs10175904	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10178380	0.96[EUR][1000 genomes]
rs10188935	0.91[EUR][1000 genomes]
rs10189873	0.91[EUR][1000 genomes]
rs10190643	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10194279	0.81[AMR][1000 genomes]
rs10195894	0.81[AMR][1000 genomes]
rs10201678	0.98[EUR][1000 genomes]
rs10202753	0.91[EUR][1000 genomes]
rs10202978	0.91[EUR][1000 genomes]
rs10206285	0.96[EUR][1000 genomes]
rs10208050	0.88[EUR][1000 genomes]
rs10208364	1.00[EUR][1000 genomes]
rs10208438	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13383146	0.94[EUR][1000 genomes]
rs13384032	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13389837	0.87[EUR][1000 genomes]
rs13390957	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13391318	0.91[EUR][1000 genomes]
rs13396881	0.94[EUR][1000 genomes]
rs13398061	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13398442	0.91[EUR][1000 genomes]
rs13403627	0.81[AMR][1000 genomes]
rs13404172	0.96[EUR][1000 genomes]
rs13411835	0.98[EUR][1000 genomes]
rs13413555	0.98[EUR][1000 genomes]
rs13414293	0.87[EUR][1000 genomes]
rs13414549	0.96[EUR][1000 genomes]
rs13417380	0.81[AMR][1000 genomes]
rs13418456	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13421613	0.96[EUR][1000 genomes]
rs13424471	0.92[EUR][1000 genomes]
rs16827613	0.91[EUR][1000 genomes]
rs16827842	0.89[EUR][1000 genomes]
rs28804162	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36103051	1.00[EUR][1000 genomes]
rs55908314	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62197162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62197163	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62197188	0.86[EUR][1000 genomes]
rs62197190	0.91[EUR][1000 genomes]
rs62197191	0.85[EUR][1000 genomes]
rs62197192	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62197196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62197197	0.96[EUR][1000 genomes]
rs62197200	0.96[EUR][1000 genomes]
rs62197201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62197202	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62197203	0.96[EUR][1000 genomes]
rs62197214	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62197216	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62197217	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62197218	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62197222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62197223	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62197226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62197227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62197253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62197255	0.98[EUR][1000 genomes]
rs62197257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62198560	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62198604	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62198605	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62198606	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62198607	0.98[EUR][1000 genomes]
rs62198611	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62198612	0.98[EUR][1000 genomes]
rs62198652	0.98[EUR][1000 genomes]
rs62198656	0.94[EUR][1000 genomes]
rs62198658	0.94[EUR][1000 genomes]
rs62198659	0.94[EUR][1000 genomes]
rs62198988	1.00[AMR][1000 genomes]
rs62199016	0.90[AMR][1000 genomes]
rs62199018	0.81[AMR][1000 genomes]
rs62199020	1.00[AMR][1000 genomes]
rs62199022	1.00[AMR][1000 genomes]
rs62199023	1.00[AMR][1000 genomes]
rs62199039	1.00[AMR][1000 genomes]
rs62199047	1.00[AMR][1000 genomes]
rs62199048	1.00[AMR][1000 genomes]
rs62199460	0.94[EUR][1000 genomes]
rs62199522	0.87[EUR][1000 genomes]
rs62199523	0.94[EUR][1000 genomes]
rs62199524	0.94[EUR][1000 genomes]
rs62199527	0.89[EUR][1000 genomes]
rs62200581	0.85[EUR][1000 genomes]
rs62200583	0.85[EUR][1000 genomes]
rs62200584	0.85[EUR][1000 genomes]
rs73979177	0.94[EUR][1000 genomes]
rs73979185	0.87[EUR][1000 genomes]
rs73980894	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1014726	chr2:187036909-187213113	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv536078	chr2:187036909-187213113	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv961743	chr2:187148271-187159618	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1006411	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv536079	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187147800-187167600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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