Variant report

Variant	rs13414549
Chromosome Location	chr2:187094223-187094224
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10169495	0.93[AMR][1000 genomes]
rs10170460	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10175904	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10178380	0.91[EUR][1000 genomes]
rs10188935	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10189873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190643	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10194279	0.84[AMR][1000 genomes]
rs10195894	0.84[AMR][1000 genomes]
rs10196464	0.84[AMR][1000 genomes]
rs10199590	0.93[AMR][1000 genomes]
rs10201678	0.94[EUR][1000 genomes]
rs10202753	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10202978	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10206032	0.85[AMR][1000 genomes]
rs10206285	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10208050	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10208364	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10208438	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13383146	0.89[EUR][1000 genomes]
rs13384032	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13389837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390957	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13391318	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396881	0.89[EUR][1000 genomes]
rs13398061	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398442	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13403627	0.84[AMR][1000 genomes]
rs13404172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411835	0.94[EUR][1000 genomes]
rs13413555	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13414293	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13417380	0.84[AMR][1000 genomes]
rs13418456	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13421613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13424471	0.96[EUR][1000 genomes]
rs16827613	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28804162	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103051	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55908314	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60597870	0.93[AMR][1000 genomes]
rs62197162	0.94[EUR][1000 genomes]
rs62197163	0.94[EUR][1000 genomes]
rs62197188	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62197190	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197191	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197192	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62197196	1.00[EUR][1000 genomes]
rs62197197	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62197200	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62197201	1.00[EUR][1000 genomes]
rs62197202	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62197203	1.00[EUR][1000 genomes]
rs62197214	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62197216	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62197217	1.00[EUR][1000 genomes]
rs62197218	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62197222	1.00[EUR][1000 genomes]
rs62197223	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62197225	0.96[EUR][1000 genomes]
rs62197226	0.94[EUR][1000 genomes]
rs62197227	0.94[EUR][1000 genomes]
rs62197253	0.94[EUR][1000 genomes]
rs62197255	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62197257	0.94[EUR][1000 genomes]
rs62198560	0.94[EUR][1000 genomes]
rs62198604	0.94[EUR][1000 genomes]
rs62198605	0.94[EUR][1000 genomes]
rs62198606	0.94[EUR][1000 genomes]
rs62198607	0.94[EUR][1000 genomes]
rs62198611	0.89[EUR][1000 genomes]
rs62198612	0.94[EUR][1000 genomes]
rs62198652	0.94[EUR][1000 genomes]
rs62198656	0.89[EUR][1000 genomes]
rs62198658	0.89[EUR][1000 genomes]
rs62198659	0.89[EUR][1000 genomes]
rs62199018	0.84[AMR][1000 genomes]
rs62199460	0.89[EUR][1000 genomes]
rs62199522	0.83[EUR][1000 genomes]
rs62199523	0.89[EUR][1000 genomes]
rs62199524	0.89[EUR][1000 genomes]
rs62199527	0.85[EUR][1000 genomes]
rs73979177	0.89[EUR][1000 genomes]
rs73979185	0.83[EUR][1000 genomes]
rs73980894	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1002243	chr2:186692815-187150225	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv536077	chr2:186692815-187150225	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1003369	chr2:186980675-187133740	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1014726	chr2:187036909-187213113	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv536078	chr2:187036909-187213113	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187081800-187094400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:187081800-187094400	Weak transcription	Gastric	stomach
3	chr2:187091800-187105400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:187092000-187094400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:187093000-187094400	Weak transcription	Pancreas	Pancrea
6	chr2:187093400-187094800	ZNF genes & repeats	Liver	Liver
7	chr2:187093400-187095000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:187093400-187095200	ZNF genes & repeats	Ovary	ovary
9	chr2:187093600-187094800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:187093600-187095200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr2:187093600-187095600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:187093600-187095600	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr2:187094000-187095000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr2:187094000-187095200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
15	chr2:187094000-187095600	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr2:187094200-187095000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr2:187094200-187095600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links