Variant report

Variant	rs10203323
Chromosome Location	chr2:115516080-115516081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:115515913..115518082-chr2:115519516..115521359,2	K562	blood:
2	chr2:115508836..115511567-chr2:115514071..115516240,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1002872	1.00[ASN][1000 genomes]
rs10211528	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12463387	1.00[ASN][1000 genomes]
rs12463533	1.00[ASN][1000 genomes]
rs12478020	1.00[ASN][1000 genomes]
rs12711803	1.00[ASN][1000 genomes]
rs13010772	1.00[ASN][1000 genomes]
rs13017277	1.00[ASN][1000 genomes]
rs13022000	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032093	1.00[ASN][1000 genomes]
rs13386918	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425488	1.00[ASN][1000 genomes]
rs13430153	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043351	1.00[ASN][1000 genomes]
rs17043357	1.00[ASN][1000 genomes]
rs17043364	1.00[ASN][1000 genomes]
rs17729212	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17729314	1.00[ASN][1000 genomes]
rs17730230	1.00[ASN][1000 genomes]
rs17786067	1.00[ASN][1000 genomes]
rs35456562	1.00[ASN][1000 genomes]
rs4569486	1.00[ASN][1000 genomes]
rs71418511	1.00[ASN][1000 genomes]
rs71418512	1.00[ASN][1000 genomes]
rs71418517	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830390	0.96[AFR][1000 genomes]
rs72955668	1.00[ASN][1000 genomes]
rs7605779	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930314	1.00[ASN][1000 genomes]
rs967034	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv431502	chr2:115139566-115617936	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv431524	chr2:115425650-115530770	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv582715	chr2:115495142-115573499	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv459019	chr2:115495142-115599013	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv874907	chr2:115515053-115532766	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv874908	chr2:115515053-115535141	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv874909	chr2:115515053-115536791	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv874910	chr2:115515053-115543018	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv874911	chr2:115515053-115554390	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv874912	chr2:115516080-115536791	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv874913	chr2:115516080-115542869	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115513200-115520800	Weak transcription	Pancreas	Pancrea

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