Variant report
| Variant | rs13386918 |
|---|---|
| Chromosome Location | chr2:115510698-115510699 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:115508836..115511567-chr2:115514071..115516240,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1002872 | 1.00[ASN][1000 genomes] |
| rs10203323 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10211528 | 0.92[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12463387 | 1.00[ASN][1000 genomes] |
| rs12463533 | 1.00[ASN][1000 genomes] |
| rs12478020 | 1.00[ASN][1000 genomes] |
| rs12711803 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13010772 | 1.00[ASN][1000 genomes] |
| rs13017277 | 1.00[ASN][1000 genomes] |
| rs13022000 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13032093 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13425488 | 1.00[ASN][1000 genomes] |
| rs13430153 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17043351 | 1.00[ASN][1000 genomes] |
| rs17043357 | 1.00[ASN][1000 genomes] |
| rs17043364 | 1.00[ASN][1000 genomes] |
| rs17729212 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17729314 | 1.00[ASN][1000 genomes] |
| rs17730230 | 1.00[ASN][1000 genomes] |
| rs17786067 | 1.00[ASN][1000 genomes] |
| rs35456562 | 1.00[ASN][1000 genomes] |
| rs4569486 | 1.00[ASN][1000 genomes] |
| rs71418511 | 1.00[ASN][1000 genomes] |
| rs71418512 | 1.00[ASN][1000 genomes] |
| rs71418517 | 0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72830390 | 0.87[AFR][1000 genomes] |
| rs72955668 | 1.00[ASN][1000 genomes] |
| rs7605779 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs930314 | 1.00[ASN][1000 genomes] |
| rs967034 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874904 | chr2:114751691-115605062 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv431502 | chr2:115139566-115617936 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv431524 | chr2:115425650-115530770 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv582715 | chr2:115495142-115573499 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv459019 | chr2:115495142-115599013 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:115510400-115511200 | Enhancers | HepG2 | liver |
| 2 | chr2:115510600-115511200 | Enhancers | Liver | Liver |
