Variant report
| Variant | rs4569486 |
|---|---|
| Chromosome Location | chr2:115464772-115464773 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1002872 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10203323 | 1.00[ASN][1000 genomes] |
| rs10211528 | 1.00[ASN][1000 genomes] |
| rs12463387 | 1.00[ASN][1000 genomes] |
| rs12463533 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12478020 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12479364 | 0.95[EUR][1000 genomes] |
| rs12711803 | 1.00[ASN][1000 genomes] |
| rs13010772 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13017277 | 1.00[ASN][1000 genomes] |
| rs13022000 | 1.00[ASN][1000 genomes] |
| rs13032093 | 1.00[ASN][1000 genomes] |
| rs13386918 | 1.00[ASN][1000 genomes] |
| rs13425488 | 1.00[ASN][1000 genomes] |
| rs13430153 | 1.00[ASN][1000 genomes] |
| rs17043351 | 1.00[ASN][1000 genomes] |
| rs17043357 | 1.00[ASN][1000 genomes] |
| rs17043364 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17729212 | 1.00[ASN][1000 genomes] |
| rs17729314 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17730230 | 1.00[ASN][1000 genomes] |
| rs17786067 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35456562 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71418511 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71418512 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71418517 | 1.00[ASN][1000 genomes] |
| rs72955668 | 1.00[ASN][1000 genomes] |
| rs7605779 | 1.00[ASN][1000 genomes] |
| rs930314 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs967034 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874904 | chr2:114751691-115605062 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv431502 | chr2:115139566-115617936 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv834338 | chr2:115320185-115481229 | Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv431524 | chr2:115425650-115530770 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | esv3460560 | chr2:115464392-115464911 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 6 | esv3460561 | chr2:115464392-115464911 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:115458600-115466600 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr2:115464200-115465600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
