The 2.0 version of rSNPBase

Variant report

Variant rs10205588
Chromosome Location chr2:179970448-179970449
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:179961000-179970800 Weak transcription Monocytes-CD14+_RO01746 blood
2 chr2:179961200-179971200 Weak transcription Dnd41 blood
3 chr2:179961600-179972400 Weak transcription Primary neutrophils fromperipheralblood blood
4 chr2:179961600-179972800 Weak transcription Spleen Spleen
5 chr2:179961600-179974000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
6 chr2:179961800-179972600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr2:179962000-179972600 Weak transcription Primary hematopoietic stem cells blood
8 chr2:179962000-179972800 Weak transcription Fetal Thymus thymus
9 chr2:179962400-179972600 Weak transcription Left Ventricle heart
10 chr2:179962800-179972400 Weak transcription Primary B cells from peripheral blood blood
11 chr2:179963000-179970800 Weak transcription Primary B cells from cord blood blood
12 chr2:179965200-179971400 Weak transcription Brain Germinal Matrix brain
13 chr2:179965400-179970800 Weak transcription HUVEC blood vessel
14 chr2:179965400-179971200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr2:179966200-179973000 Weak transcription Fetal Muscle Trunk muscle
16 chr2:179966400-179971000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr2:179966400-179972400 Weak transcription Primary monocytes fromperipheralblood blood
18 chr2:179966400-179972600 Weak transcription Fetal Muscle Leg muscle
19 chr2:179966400-179975600 Weak transcription Aorta Aorta
20 chr2:179966600-179971600 Weak transcription Fetal Brain Female brain
21 chr2:179966600-179972400 Weak transcription Stomach Smooth Muscle stomach
22 chr2:179966800-179971200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr2:179967000-179972200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr2:179967200-179970800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr2:179967200-179971200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr2:179967200-179976800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr2:179967400-179970800 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr2:179967400-179971000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr2:179967400-179971800 Weak transcription ES-WA7 Cell Line embryonic stem cell
30 chr2:179967600-179971000 Weak transcription Fetal Heart heart
31 chr2:179967800-179980200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr2:179967800-179982400 Weak transcription Fetal Brain Male brain
33 chr2:179967800-180004400 Weak transcription Esophagus oesophagus
34 chr2:179968000-179970800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr2:179968600-179971000 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr2:179969000-179971200 Weak transcription Fetal Lung lung
37 chr2:179969000-179971200 Enhancers A549 lung
38 chr2:179969000-179972400 Enhancers Muscle Satellite Cultured Cells --
39 chr2:179969200-179972000 Enhancers Rectal Smooth Muscle rectum
40 chr2:179969200-179972800 Enhancers Colon Smooth Muscle Colon
41 chr2:179969200-179973000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr2:179969400-179970600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr2:179969400-179970800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr2:179969400-179972400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr2:179969400-179980000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
46 chr2:179969600-179970800 Weak transcription Adipose Nuclei Adipose
47 chr2:179969600-179971000 Weak transcription iPS-18 Cell Line embryonic stem cell
48 chr2:179969600-179971200 Enhancers Brain Cingulate Gyrus brain
49 chr2:179969600-179973000 Enhancers HMEC breast
50 chr2:179969800-179971200 Enhancers Brain Angular Gyrus brain

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Last update: Aug 31, 2015