Variant report

Variant	rs10205607
Chromosome Location	chr2:212845461-212845462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10180494	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12473131	0.90[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs12616932	0.83[CHD][hapmap];0.91[JPT][hapmap]
rs12623434	0.90[JPT][hapmap]
rs1402719	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs2118892	0.92[CEU][hapmap]
rs2685006	0.89[ASN][1000 genomes]
rs2888037	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs4673644	0.85[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs6435682	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs6707590	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs6744796	0.90[JPT][hapmap]
rs707284	0.85[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs72935738	0.93[ASN][1000 genomes]
rs7578784	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs7598440	0.85[CEU][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap]
rs839499	0.94[JPT][hapmap]
rs839500	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs839501	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs839504	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs839512	0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs839515	0.90[JPT][hapmap]
rs839516	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs839517	0.83[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs839518	0.89[ASN][1000 genomes]
rs839519	0.81[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs839520	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs839521	0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs839522	0.89[ASN][1000 genomes]
rs839523	0.81[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs839540	0.81[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs839541	0.87[ASN][1000 genomes]
rs860821	0.85[ASN][1000 genomes]
rs864528	0.89[ASN][1000 genomes]
rs990741	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875791	chr2:212824999-212874828	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875792	chr2:212824999-212896571	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv584343	chr2:212830200-212906355	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1012269	chr2:212837487-212915640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv525127	chr2:212839046-212916758	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv875793	chr2:212842777-212866473	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv875794	chr2:212842777-212885510	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv875795	chr2:212845292-212868624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv875796	chr2:212845292-212874828	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10205607	RPE	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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