Variant report

Variant	rs1402719
Chromosome Location	chr2:212841472-212841473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10205607	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10497954	0.82[CHB][hapmap]
rs10497957	0.84[YRI][hapmap]
rs12473131	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12613571	0.82[CHB][hapmap]
rs12616932	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12623434	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16847307	0.82[CHB][hapmap]
rs16847322	0.82[CHB][hapmap]
rs16847357	0.83[YRI][hapmap]
rs2083297	0.88[YRI][hapmap]
rs2102996	0.81[CHB][hapmap]
rs2685006	0.94[ASN][1000 genomes]
rs2888037	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs4672629	0.81[CHB][hapmap]
rs4673644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6435682	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6707590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6744796	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs707284	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72935738	0.89[ASN][1000 genomes]
rs839499	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs839500	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs839501	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs839504	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs839512	0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs839515	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs839516	0.91[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs839517	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs839518	0.94[ASN][1000 genomes]
rs839519	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs839520	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs839521	0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs839522	0.94[ASN][1000 genomes]
rs839523	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs839540	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs839541	0.94[ASN][1000 genomes]
rs860821	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs864528	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs990741	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875791	chr2:212824999-212874828	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875792	chr2:212824999-212896571	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv584343	chr2:212830200-212906355	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1012269	chr2:212837487-212915640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv525127	chr2:212839046-212916758	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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