Variant report

Variant	rs16847357
Chromosome Location	chr2:212829497-212829498
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr2:212829419-212829612	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
ERBB4	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10497957	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11695985	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12616932	0.94[YRI][hapmap]
rs12997949	0.85[ASN][1000 genomes]
rs12998591	0.82[ASN][1000 genomes]
rs13025703	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1402719	0.83[YRI][hapmap]
rs16847207	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs16847218	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17414925	0.88[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2083297	0.88[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2139936	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2139937	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2579980	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2888037	0.89[YRI][hapmap]
rs34306926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3452	0.89[ASN][1000 genomes]
rs34765931	0.82[ASN][1000 genomes]
rs57175680	0.83[ASN][1000 genomes]
rs6435682	0.88[YRI][hapmap]
rs67565187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs707283	1.00[JPT][hapmap]
rs839509	0.88[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs839511	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs839525	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs839526	0.91[ASN][1000 genomes]
rs839527	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs839528	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs839530	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs839536	0.85[ASN][1000 genomes]
rs957698	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs990741	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875791	chr2:212824999-212874828	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875792	chr2:212824999-212896571	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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