Variant report

Variant	rs839511
Chromosome Location	chr2:212822242-212822243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212814571..212817432-chr2:212820725..212822256,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10497957	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11695985	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12997949	0.96[ASN][1000 genomes]
rs13025703	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16847207	0.86[JPT][hapmap]
rs16847218	0.85[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs16847357	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17414925	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2083297	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs2139936	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2139937	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2579980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34306926	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3452	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57175680	0.90[ASN][1000 genomes]
rs67565187	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs707283	1.00[JPT][hapmap]
rs839509	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs839519	0.93[ASW][hapmap];0.82[LWK][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes]
rs839525	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs839526	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs839527	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs839528	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs839530	0.93[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs839536	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs839540	0.93[ASW][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs957698	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212821800-212823400	Enhancers	GM12878-XiMat	blood

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